{ "type": "genome", "identifier": "GCA_903913455.1", "organism": "uncultured Opitutae bacterium", "title": "uncultured Opitutae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903913455.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6946538", "wgs_master": "CAIWLG000000000.1", "refseq_category": "na", "taxid": "575426", "species_taxid": "575426", "organism_name": "uncultured Opitutae bacterium", "infraspecific_name": "", "isolate": "AM5_bin-1211", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/19", "asm_name": "freshwater MAG --- AM5_bin-1211", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/913/455/GCA_903913455.1_freshwater_MAG_---_AM5_bin-1211", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-19", "dateModified": "2020-07-19", "datePublished": "2020-07-19", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Opitutae bacterium" ], "sample_taxid": [ "575426" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Finland" ], "sample_host_location_id": [], "data_size": "0.988 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 44.0, "max": 44.0 }, "completeness": 74.24, "contamination": 0.52, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3546393", "Number of Sequences": "475", "Longest Sequences (bp)": "38134", "N50 (bp)": "10167", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.6", "Number of CDSs": "2771", "Average Protein Length": "325.2", "Coding Ratio (%)": "76.2", "Number of rRNAs": "1", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rariglobus hedericola", "strain": "strain=53C-WASEF", "accession": "GCA_007559335.1", "taxid": 2597822, "species_taxid": 2597822, "relation_to_type": "type", "validated": true, "ani": 77.9389, "matched_fragments": 173, "total_fragments": 919, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Opitutus terrae", "strain": "strain=PB90-1", "accession": "GCA_000019965.1", "taxid": 107709, "species_taxid": 107709, "relation_to_type": "type", "validated": true, "ani": 77.654, "matched_fragments": 281, "total_fragments": 919, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nibricoccus aquaticus", "strain": "strain=HZ-65", "accession": "GCA_002310495.1", "taxid": 2576891, "species_taxid": 2576891, "relation_to_type": "type", "validated": true, "ani": 77.5139, "matched_fragments": 199, "total_fragments": 919, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cephaloticoccus primus", "strain": "strain=CAG34", "accession": "GCA_001580015.1", "taxid": 1548207, "species_taxid": 1548207, "relation_to_type": "type", "validated": true, "ani": 77.1303, "matched_fragments": 132, "total_fragments": 919, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ereboglobus luteus", "strain": "strain=Ho45", "accession": "GCA_003096195.1", "taxid": 1796921, "species_taxid": 1796921, "relation_to_type": "type", "validated": true, "ani": 76.8118, "matched_fragments": 132, "total_fragments": 919, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cephaloticoccus capnophilus", "strain": "strain=CV41", "accession": "GCA_001580045.1", "taxid": 1548208, "species_taxid": 1548208, "relation_to_type": "type", "validated": true, "ani": 76.5647, "matched_fragments": 88, "total_fragments": 919, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geminisphaera colitermitum", "strain": "strain=TAV2", "accession": "GCA_000171235.2", "taxid": 1148786, "species_taxid": 1148786, "relation_to_type": "type", "validated": true, "ani": 76.5607, "matched_fragments": 133, "total_fragments": 919, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 74.24, "contamination": 0.52, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_903862955.1", "gtdb_species": "s__Opi-474 sp903862955", "ani": 99.9461, "matched_fragments": 891, "total_fragments": 919, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Opi-474", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.96", "min_intra_species_ani": "99.95", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 5, "status": "conclusive" }, { "accession": "GCA_903855985.1", "gtdb_species": "s__Opi-474 sp903855985", "ani": 83.2442, "matched_fragments": 570, "total_fragments": 919, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Opi-474", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.84", "min_intra_species_ani": "99.84", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_903839035.1", "gtdb_species": "s__Opi-474 sp903839035", "ani": 82.856, "matched_fragments": 610, "total_fragments": 919, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Opi-474", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.67", "min_intra_species_ani": "99.48", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.89", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCA_003402695.1", "gtdb_species": "s__Opi-474 sp003402695", "ani": 82.5624, "matched_fragments": 480, "total_fragments": 919, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Opi-474", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903872505.1", "gtdb_species": "s__Opi-474 sp903872505", "ani": 82.3469, "matched_fragments": 613, "total_fragments": 919, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Opi-474", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_903825285.1", "gtdb_species": "s__Opi-474 sp903825285", "ani": 81.4235, "matched_fragments": 577, "total_fragments": 919, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Opi-474", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.78", "min_intra_species_ani": "99.55", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.94", "num_clustered_genomes": 12, "status": "-" }, { "accession": "GCA_903830425.1", "gtdb_species": "s__Opi-474 sp903830425", "ani": 80.5829, "matched_fragments": 468, "total_fragments": 919, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Opi-474", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.49", "min_intra_species_ani": "99.28", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.87", "num_clustered_genomes": 25, "status": "-" }, { "accession": "GCA_903859715.1", "gtdb_species": "s__Opi-474 sp903859715", "ani": 80.5269, "matched_fragments": 473, "total_fragments": 919, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Opi-474", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.96", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.96", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCA_903881475.1", "gtdb_species": "s__Opi-474 sp903881475", "ani": 80.5237, "matched_fragments": 501, "total_fragments": 919, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Opi-474", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.50", "min_intra_species_ani": "98.31", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.83", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_900104925.1", "gtdb_species": "s__Lacunisphaera sp900104925", "ani": 78.82, "matched_fragments": 289, "total_fragments": 919, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Lacunisphaera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016190985.1", "gtdb_species": "s__Lacunisphaera sp016190985", "ani": 78.5419, "matched_fragments": 263, "total_fragments": 919, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Lacunisphaera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Verrucomicrobiota", "c__Verrucomicrobiae", "o__Opitutales", "f__Opitutaceae", "g__Opi-474", "s__Opi-474 sp903862955" ], "_genome_taxon": [ "uncultured", "Opitutae", "bacterium", "d__Bacteria", "p__Verrucomicrobiota", "c__Verrucomicrobiae", "o__Opitutales", "f__Opitutaceae", "g__Opi-474", "s__Opi-474 sp903862955", "Bacteria", "Verrucomicrobiota", "Verrucomicrobiae", "Opitutales", "Opitutaceae", "Opi-474", "Opi-474", "sp903862955" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }