{ "type": "genome", "identifier": "GCA_903916655.1", "organism": "uncultured proteobacterium", "title": "uncultured proteobacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903916655.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6952420", "wgs_master": "CAIWXK000000000.1", "refseq_category": "na", "taxid": "153809", "species_taxid": "153809", "organism_name": "uncultured proteobacterium", "infraspecific_name": "", "isolate": "ErkenSummer_bin-1942", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/20", "asm_name": "freshwater MAG --- ErkenSummer_bin-1942", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/916/655/GCA_903916655.1_freshwater_MAG_---_ErkenSummer_bin-1942", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-20", "dateModified": "2020-07-20", "datePublished": "2020-07-20", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured proteobacterium" ], "sample_taxid": [ "153809" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden" ], "sample_host_location_id": [], "data_size": "1.621 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 79.17, "contamination": 8.33, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "6004001", "Number of Sequences": "218", "Longest Sequences (bp)": "203065", "N50 (bp)": "59500", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.4", "Number of CDSs": "5218", "Average Protein Length": "346.4", "Coding Ratio (%)": "90.3", "Number of rRNAs": "0", "Number of tRNAs": "60", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vulgatibacter incomptus", "strain": "strain=DSM 27710", "accession": "GCA_001263175.1", "taxid": 1391653, "species_taxid": 1391653, "relation_to_type": "type", "validated": true, "ani": 75.1697, "matched_fragments": 143, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vulcaniibacterium gelatinicum", "strain": "strain=R-5-52-3", "accession": "GCA_008033445.1", "taxid": 2598725, "species_taxid": 2598725, "relation_to_type": "type", "validated": true, "ani": 75.1072, "matched_fragments": 124, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus terminator", "strain": "strain=CA054A", "accession": "GCA_003611635.1", "taxid": 2316733, "species_taxid": 2316733, "relation_to_type": "type", "validated": true, "ani": 75.0191, "matched_fragments": 200, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Archangium violaceum", "strain": "strain=Cb vi76", "accession": "GCA_000733295.1", "taxid": 83451, "species_taxid": 83451, "relation_to_type": "type", "validated": true, "ani": 74.9711, "matched_fragments": 236, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pyxidicoccus trucidator", "strain": "strain=CA060A", "accession": "GCA_010894435.1", "taxid": 2709662, "species_taxid": 2709662, "relation_to_type": "type", "validated": true, "ani": 74.9456, "matched_fragments": 277, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaeromyxobacter dehalogenans", "strain": "strain=2CP-1", "accession": "GCA_000022145.1", "taxid": 161493, "species_taxid": 161493, "relation_to_type": "type", "validated": true, "ani": 74.9443, "matched_fragments": 327, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax citrulli", "strain": "strain=DSM 17060", "accession": "GCA_900100305.1", "taxid": 80869, "species_taxid": 80869, "relation_to_type": "type", "validated": true, "ani": 74.9156, "matched_fragments": 133, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haliangium ochraceum", "strain": "strain=DSM 14365", "accession": "GCA_000024805.1", "taxid": 80816, "species_taxid": 80816, "relation_to_type": "type", "validated": true, "ani": 74.9153, "matched_fragments": 313, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax oryzae", "strain": "strain=ATCC 19882", "accession": "GCA_000687165.1", "taxid": 862720, "species_taxid": 862720, "relation_to_type": "type", "validated": true, "ani": 74.9121, "matched_fragments": 148, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax anthurii", "strain": "strain=CFPB 3232", "accession": "GCA_003269065.1", "taxid": 78229, "species_taxid": 78229, "relation_to_type": "type", "validated": true, "ani": 74.88, "matched_fragments": 165, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter lithotrophicus", "strain": "strain=RBP-1", "accession": "GCA_012184415.1", "taxid": 2606681, "species_taxid": 2606681, "relation_to_type": "type", "validated": true, "ani": 74.8786, "matched_fragments": 117, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Archangium gephyra", "strain": "strain=DSM 2261", "accession": "GCA_003387095.1", "taxid": 48, "species_taxid": 48, "relation_to_type": "type", "validated": true, "ani": 74.8523, "matched_fragments": 280, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Archangium gephyra", "strain": "strain=DSM 2261", "accession": "GCA_001027285.1", "taxid": 48, "species_taxid": 48, "relation_to_type": "type", "validated": true, "ani": 74.8456, "matched_fragments": 288, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalorhabdus denitrificans", "strain": "strain=HL 19", "accession": "GCA_900101365.1", "taxid": 381306, "species_taxid": 381306, "relation_to_type": "type", "validated": true, "ani": 74.8306, "matched_fragments": 80, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax avenae subsp. avenae", "strain": "strain=ATCC 19860", "accession": "GCA_000176855.2", "taxid": 80870, "species_taxid": 80867, "relation_to_type": "suspected-type", "validated": true, "ani": 74.8266, "matched_fragments": 139, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalorhabdus denitrificans", "strain": "strain=HL 19", "accession": "GCA_001399755.1", "taxid": 381306, "species_taxid": 381306, "relation_to_type": "type", "validated": true, "ani": 74.8204, "matched_fragments": 82, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobacter gummiphilus", "strain": "strain=NBRC 109400", "accession": "GCA_002762215.1", "taxid": 946333, "species_taxid": 946333, "relation_to_type": "type", "validated": true, "ani": 74.8164, "matched_fragments": 212, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobacter gummiphilus", "strain": "strain=NS21", "accession": "GCA_002116905.1", "taxid": 946333, "species_taxid": 946333, "relation_to_type": "type", "validated": true, "ani": 74.813, "matched_fragments": 214, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora iranica", "strain": "strain=IBRC-M 10403", "accession": "GCA_900101685.1", "taxid": 1271860, "species_taxid": 1271860, "relation_to_type": "type", "validated": true, "ani": 74.8123, "matched_fragments": 156, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum tolulyticum", "strain": "strain=ATCC 51758", "accession": "GCA_900156155.1", "taxid": 34027, "species_taxid": 34027, "relation_to_type": "type", "validated": true, "ani": 74.809, "matched_fragments": 110, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tistlia consotensis", "strain": "strain=USBA 355", "accession": "GCA_900177295.1", "taxid": 1321365, "species_taxid": 1321365, "relation_to_type": "type", "validated": true, "ani": 74.8024, "matched_fragments": 241, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tistlia consotensis", "strain": "strain=DSM 21585", "accession": "GCA_900188055.1", "taxid": 1321365, "species_taxid": 1321365, "relation_to_type": "type", "validated": true, "ani": 74.7994, "matched_fragments": 243, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter monticola", "strain": "strain=KACC 19175", "accession": "GCA_016722785.1", "taxid": 1926872, "species_taxid": 1926872, "relation_to_type": "type", "validated": true, "ani": 74.764, "matched_fragments": 159, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces genisteinicus", "strain": "strain=CRPJ-33", "accession": "GCA_014489615.1", "taxid": 2768068, "species_taxid": 2768068, "relation_to_type": "type", "validated": true, "ani": 74.7597, "matched_fragments": 240, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium glycinis", "strain": "strain=CNPSo 4016", "accession": "GCA_016031655.1", "taxid": 2751812, "species_taxid": 2751812, "relation_to_type": "type", "validated": true, "ani": 74.7503, "matched_fragments": 121, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseococcus microcysteis", "strain": "strain=NIBR12", "accession": "GCA_014764365.1", "taxid": 2771361, "species_taxid": 2771361, "relation_to_type": "type", "validated": true, "ani": 74.7377, "matched_fragments": 119, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseococcus thiosulfatophilus", "strain": "strain=RB-3", "accession": "GCA_017311575.1", "taxid": 35813, "species_taxid": 35813, "relation_to_type": "type", "validated": true, "ani": 74.7374, "matched_fragments": 136, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces virginiae", "strain": "strain=NRRL ISP-5094", "accession": "GCA_000720455.1", "taxid": 1961, "species_taxid": 1961, "relation_to_type": "suspected-type", "validated": true, "ani": 74.7219, "matched_fragments": 227, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis jiangsuensis", "strain": "strain=DSM 45859", "accession": "GCA_014204865.1", "taxid": 1181879, "species_taxid": 1181879, "relation_to_type": "type", "validated": true, "ani": 74.7216, "matched_fragments": 182, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces kanamyceticus", "strain": "strain=ATCC 12853", "accession": "GCA_008704495.1", "taxid": 1967, "species_taxid": 1967, "relation_to_type": "type", "validated": true, "ani": 74.7138, "matched_fragments": 252, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces kanamyceticus", "strain": "strain=NRRL B-2535", "accession": "GCA_001418465.1", "taxid": 1967, "species_taxid": 1967, "relation_to_type": "type", "validated": true, "ani": 74.7066, "matched_fragments": 232, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Demequina iriomotensis", "strain": "strain=NBRC 109399", "accession": "GCA_000971395.1", "taxid": 1536641, "species_taxid": 1536641, "relation_to_type": "type", "validated": true, "ani": 74.6994, "matched_fragments": 135, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium centrolobii", "strain": "strain=BR 10245", "accession": "GCA_001641635.1", "taxid": 1505087, "species_taxid": 1505087, "relation_to_type": "type", "validated": true, "ani": 74.6632, "matched_fragments": 109, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces rishiriensis", "strain": "strain=NBRC 13407", "accession": "GCA_003112535.1", "taxid": 68264, "species_taxid": 68264, "relation_to_type": "type", "validated": true, "ani": 74.6537, "matched_fragments": 226, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Patulibacter minatonensis", "strain": "strain=DSM 18081", "accession": "GCA_000519325.1", "taxid": 298163, "species_taxid": 298163, "relation_to_type": "type", "validated": true, "ani": 74.6525, "matched_fragments": 212, "total_fragments": 1888, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 79.17, "contamination": 8.33, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903885375.1", "gtdb_species": "s__SXON01 sp903885375", "ani": 99.9091, "matched_fragments": 1797, "total_fragments": 1888, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA796;o__UBA796;f__SXON01;g__SXON01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.91", "min_intra_species_ani": "99.89", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.95", "num_clustered_genomes": 10, "status": "conclusive" }, { "accession": "GCA_903921785.1", "gtdb_species": "s__SXON01 sp903921785", "ani": 78.8156, "matched_fragments": 904, "total_fragments": 1888, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA796;o__UBA796;f__SXON01;g__SXON01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.91", "min_intra_species_ani": "99.91", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.95", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_005776735.1", "gtdb_species": "s__SXON01 sp005776735", "ani": 78.3766, "matched_fragments": 673, "total_fragments": 1888, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA796;o__UBA796;f__SXON01;g__SXON01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016875435.1", "gtdb_species": "s__SXON01 sp016875435", "ani": 78.0551, "matched_fragments": 623, "total_fragments": 1888, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA796;o__UBA796;f__SXON01;g__SXON01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016875315.1", "gtdb_species": "s__SXON01 sp016875315", "ani": 78.0251, "matched_fragments": 636, "total_fragments": 1888, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA796;o__UBA796;f__SXON01;g__SXON01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014191855.1", "gtdb_species": "s__SXON01 sp014191855", "ani": 77.9277, "matched_fragments": 725, "total_fragments": 1888, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA796;o__UBA796;f__SXON01;g__SXON01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009692585.1", "gtdb_species": "s__SXON01 sp009692585", "ani": 77.8045, "matched_fragments": 574, "total_fragments": 1888, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA796;o__UBA796;f__SXON01;g__SXON01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_005778355.1", "gtdb_species": "s__SXON01 sp005778355", "ani": 77.4783, "matched_fragments": 673, "total_fragments": 1888, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA796;o__UBA796;f__SXON01;g__SXON01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.89", "min_intra_species_ani": "99.88", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.94", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_903959175.1", "gtdb_species": "s__CAJBVW01 sp903959175", "ani": 76.9968, "matched_fragments": 606, "total_fragments": 1888, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA796;o__UBA796;f__SXON01;g__CAJBVW01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_006226595.1", "gtdb_species": "s__M1803 sp006226595", "ani": 75.4352, "matched_fragments": 307, "total_fragments": 1888, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA796;o__UBA796;f__GCA-2862545;g__M1803", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017644045.1", "gtdb_species": "s__UBA1660 sp017644045", "ani": 75.0776, "matched_fragments": 266, "total_fragments": 1888, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__SG8-38;g__UBA1660", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018266075.1", "gtdb_species": "s__SZAS-1 sp018266075", "ani": 75.015, "matched_fragments": 254, "total_fragments": 1888, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__SZAS-1;g__SZAS-1", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018242005.1", "gtdb_species": "s__Alicycliphilus sp018242005", "ani": 74.8942, "matched_fragments": 77, "total_fragments": 1888, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Alicycliphilus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002090095.1", "gtdb_species": "s__Demequina sp002090095", "ani": 74.6703, "matched_fragments": 87, "total_fragments": 1888, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Demequinaceae;g__Demequina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Myxococcota", "c__UBA796", "o__UBA796", "f__SXON01", "g__SXON01", "s__SXON01 sp903885375" ], "_genome_taxon": [ "uncultured", "proteobacterium", "d__Bacteria", "p__Myxococcota", "c__UBA796", "o__UBA796", "f__SXON01", "g__SXON01", "s__SXON01 sp903885375", "Bacteria", "Myxococcota", "UBA796", "UBA796", "SXON01", "SXON01", "SXON01", "sp903885375" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }