{ "type": "genome", "identifier": "GCA_903916995.1", "organism": "uncultured Acetobacteraceae bacterium", "title": "uncultured Acetobacteraceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903916995.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6949979", "wgs_master": "CAIWYU000000000.1", "refseq_category": "na", "taxid": "169975", "species_taxid": "169975", "organism_name": "uncultured Acetobacteraceae bacterium", "infraspecific_name": "", "isolate": "Umea3p1_bin-1101", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/20", "asm_name": "freshwater MAG --- Umea3p1_bin-1101", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/916/995/GCA_903916995.1_freshwater_MAG_---_Umea3p1_bin-1101", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-20", "dateModified": "2020-07-20", "datePublished": "2020-07-20", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Acetobacteraceae bacterium" ], "sample_taxid": [ "169975" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden" ], "sample_host_location_id": [], "data_size": "1.495 MB", "sample_ph_range": { "min": 538.0, "max": 538.0 }, "sample_temperature_range": { "min": 138.0, "max": 138.0 }, "completeness": 93.4, "contamination": 5.07, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5354715", "Number of Sequences": "727", "Longest Sequences (bp)": "59115", "N50 (bp)": "11102", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.7", "Number of CDSs": "4782", "Average Protein Length": "293.8", "Coding Ratio (%)": "78.7", "Number of rRNAs": "0", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhodopila globiformis", "strain": "strain=DSM 161", "accession": "GCA_002937115.1", "taxid": 1071, "species_taxid": 1071, "relation_to_type": "type", "validated": true, "ani": 77.5563, "matched_fragments": 461, "total_fragments": 1397, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovastum atsumiense", "strain": "strain=G2-11", "accession": "GCA_937425535.1", "taxid": 504468, "species_taxid": 504468, "relation_to_type": "type", "validated": true, "ani": 76.9557, "matched_fragments": 263, "total_fragments": 1397, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidisphaera rubrifaciens", "strain": "strain=HS-AP3", "accession": "GCA_000964365.1", "taxid": 50715, "species_taxid": 50715, "relation_to_type": "type", "validated": true, "ani": 76.9553, "matched_fragments": 166, "total_fragments": 1397, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconacetobacter dulcium", "strain": "strain=LMG 1728", "accession": "GCA_014174165.1", "taxid": 2729096, "species_taxid": 2729096, "relation_to_type": "type", "validated": true, "ani": 76.615, "matched_fragments": 127, "total_fragments": 1397, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas haemaphysalidis", "strain": "strain=546", "accession": "GCA_017355405.1", "taxid": 2768162, "species_taxid": 2768162, "relation_to_type": "type", "validated": true, "ani": 76.5578, "matched_fragments": 198, "total_fragments": 1397, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas oryzae", "strain": "strain=KCTC 42542", "accession": "GCA_008386565.1", "taxid": 1608942, "species_taxid": 1608942, "relation_to_type": "type", "validated": true, "ani": 76.5535, "matched_fragments": 176, "total_fragments": 1397, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas oryzicola", "strain": "strain=KCTC 22478", "accession": "GCA_012163135.1", "taxid": 535904, "species_taxid": 535904, "relation_to_type": "type", "validated": true, "ani": 76.4229, "matched_fragments": 219, "total_fragments": 1397, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas rhizosphaerae", "strain": "strain=YW11", "accession": "GCA_002631185.1", "taxid": 1335062, "species_taxid": 1335062, "relation_to_type": "type", "validated": true, "ani": 76.3333, "matched_fragments": 211, "total_fragments": 1397, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas aerilata", "strain": "strain=DSM 19363", "accession": "GCA_000711725.1", "taxid": 452982, "species_taxid": 452982, "relation_to_type": "type", "validated": true, "ani": 76.3251, "matched_fragments": 154, "total_fragments": 1397, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas coralli", "strain": "strain=M0104", "accession": "GCA_009829925.1", "taxid": 2545983, "species_taxid": 2545983, "relation_to_type": "type", "validated": true, "ani": 76.3236, "matched_fragments": 206, "total_fragments": 1397, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas mucosa", "strain": "strain=NCTC13291", "accession": "GCA_900455935.1", "taxid": 207340, "species_taxid": 207340, "relation_to_type": "type", "validated": true, "ani": 76.3026, "matched_fragments": 188, "total_fragments": 1397, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas cervicalis", "strain": "strain=ATCC 49957", "accession": "GCA_000164635.1", "taxid": 204525, "species_taxid": 204525, "relation_to_type": "type", "validated": true, "ani": 76.2784, "matched_fragments": 204, "total_fragments": 1397, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas mucosa", "strain": "strain=ATCC BAA-692", "accession": "GCA_000622225.1", "taxid": 207340, "species_taxid": 207340, "relation_to_type": "type", "validated": true, "ani": 76.2494, "matched_fragments": 193, "total_fragments": 1397, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas aerophila", "strain": "strain=NBRC 108923", "accession": "GCA_014490485.1", "taxid": 1224513, "species_taxid": 1224513, "relation_to_type": "type", "validated": true, "ani": 76.2357, "matched_fragments": 211, "total_fragments": 1397, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Siccirubricoccus deserti", "strain": "strain=SYSU D8009", "accession": "GCA_014283215.1", "taxid": 2013562, 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