{ "type": "genome", "identifier": "GCA_903921175.1", "organism": "uncultured Campylobacterales bacterium", "title": "uncultured Campylobacterales bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903921175.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6950504", "wgs_master": "CAIXOU000000000.1", "refseq_category": "na", "taxid": "352960", "species_taxid": "352960", "organism_name": "uncultured Campylobacterales bacterium", "infraspecific_name": "", "isolate": "MJ-2014-D2_bin-0382", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/17", "asm_name": "freshwater MAG --- MJ-2014-D2_bin-0382", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/921/175/GCA_903921175.1_freshwater_MAG_---_MJ-2014-D2_bin-0382", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-17", "dateModified": "2020-07-17", "datePublished": "2020-07-17", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Campylobacterales bacterium" ], "sample_taxid": [ "352960" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Finland" ], "sample_host_location_id": [], "data_size": "0.479 MB", "sample_ph_range": { "min": 554.0, "max": 554.0 }, "sample_temperature_range": { "min": 126.0, "max": 126.0 }, "completeness": 92.13, "contamination": 5.21, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1683199", "Number of Sequences": "427", "Longest Sequences (bp)": "24342", "N50 (bp)": "4649", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.8", "Number of CDSs": "1360", "Average Protein Length": "282.0", "Coding Ratio (%)": "68.4", "Number of rRNAs": "0", "Number of tRNAs": "18", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sulfurimonas indica", "strain": "strain=NW8N", "accession": "GCA_009192995.1", "taxid": 2508707, "species_taxid": 2508707, "relation_to_type": "type", "validated": true, "ani": 77.4474, "matched_fragments": 58, "total_fragments": 319, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurimonas autotrophica", "strain": "strain=DSM 16294", "accession": "GCA_000147355.1", "taxid": 202747, "species_taxid": 202747, "relation_to_type": "type", "validated": true, "ani": 77.3747, "matched_fragments": 57, "total_fragments": 319, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurimonas paralvinellae", "strain": "strain=GO25", "accession": "GCA_014905135.1", "taxid": 317658, "species_taxid": 317658, "relation_to_type": "type", "validated": true, "ani": 77.3319, "matched_fragments": 54, "total_fragments": 319, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Candidatus Sulfurimonas baltica", "strain": "strain=GD2", "accession": "GCA_015265455.1", "taxid": 2740404, "species_taxid": 2740404, "relation_to_type": "type", "validated": true, "ani": 77.3144, "matched_fragments": 58, "total_fragments": 319, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurimonas gotlandica", "strain": "strain=GD1", "accession": "GCA_000242915.2", "taxid": 1176482, "species_taxid": 1176482, "relation_to_type": "type", "validated": true, "ani": 77.1496, "matched_fragments": 56, "total_fragments": 319, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurimonas gotlandica", "strain": "strain=GD 1", "accession": "GCA_000156095.1", "taxid": 1176482, "species_taxid": 1176482, "relation_to_type": "type", "validated": true, "ani": 77.1468, "matched_fragments": 55, "total_fragments": 319, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurimonas denitrificans", "strain": "strain=DSM 1251", "accession": "GCA_000012965.1", "taxid": 39766, "species_taxid": 39766, "relation_to_type": "type", "validated": true, "ani": 77.0401, "matched_fragments": 52, "total_fragments": 319, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Candidatus Sulfurimonas marisnigri", "strain": "strain=SoZ1", "accession": "GCA_015265475.1", "taxid": 2740405, "species_taxid": 2740405, "relation_to_type": "type", "validated": true, "ani": 76.7884, "matched_fragments": 51, "total_fragments": 319, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurimonas lithotrophica", "strain": "strain=GYSZ_1", "accession": "GCA_009258225.1", "taxid": 2590022, "species_taxid": 2590022, "relation_to_type": "type", "validated": true, "ani": 76.5492, "matched_fragments": 52, "total_fragments": 319, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 92.13, "contamination": 5.21, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903892995.1", "gtdb_species": "s__CAITKP01 sp903892995", "ani": 98.9981, "matched_fragments": 310, "total_fragments": 319, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurimonadaceae;g__CAITKP01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.47", "min_intra_species_ani": "98.97", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCA_903885085.1", "gtdb_species": "s__CAITKP01 sp903885085", "ani": 81.5196, "matched_fragments": 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"d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurimonadaceae;g__Sulfurimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.89", "min_intra_species_ani": "98.30", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 4, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.398, "cell_length": 0.259, "doubling_h": 0.335, "growth_tmp": 35.128, "optimum_tmp": 33.644, "optimum_ph": 6.803, "genome_size": 2102520.983, "gc_content": 35.015, "coding_genes": 2000.919, "rRNA16S_genes": 2.702, "tRNA_genes": 43.881, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.89, "range_salinity": 0.5, "facultative_respiration": 0.033, "anaerobic_respiration": 0.112, "aerobic_respiration": 0.853, "mesophilic_range_tmp": 0.968, "thermophilic_range_tmp": 0.031, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.368, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.017, "vibrio_cell_shape": 0.087, "spiral_cell_shape": 0.526 }, "_gtdb_taxon": [ "d__Bacteria", "p__Campylobacterota", "c__Campylobacteria", "o__Campylobacterales", "f__Sulfurimonadaceae", "g__CAITKP01", "s__CAITKP01 sp903892995" ], "_genome_taxon": [ "uncultured", "Campylobacterales", "bacterium", "d__Bacteria", "p__Campylobacterota", "c__Campylobacteria", "o__Campylobacterales", "f__Sulfurimonadaceae", "g__CAITKP01", "s__CAITKP01 sp903892995", "Bacteria", "Campylobacterota", "Campylobacteria", "Campylobacterales", "Sulfurimonadaceae", "CAITKP01", "CAITKP01", "sp903892995" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }