{ "type": "genome", "identifier": "GCA_903933835.1", "organism": "uncultured beta proteobacterium", "title": "uncultured beta proteobacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903933835.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6948937", "wgs_master": "CAIZLL000000000.1", "refseq_category": "na", "taxid": "86027", "species_taxid": "86027", "organism_name": "uncultured beta proteobacterium", "infraspecific_name": "", "isolate": "Loc090402-4m_bin-1030", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/19", "asm_name": "freshwater MAG --- Loc090402-4m_bin-1030", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/933/835/GCA_903933835.1_freshwater_MAG_---_Loc090402-4m_bin-1030", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-19", "dateModified": "2020-07-19", "datePublished": "2020-07-19", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured beta proteobacterium" ], "sample_taxid": [ "86027" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Switzerland" ], "sample_host_location_id": [], "data_size": "1.077 MB", "sample_ph_range": { "min": 804.0, "max": 804.0 }, "sample_temperature_range": { "min": 77.0, "max": 77.0 }, "completeness": 100.0, "contamination": 0.46, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3813990", "Number of Sequences": "135", "Longest Sequences (bp)": "150700", "N50 (bp)": "76086", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.5", "Number of CDSs": "3433", "Average Protein Length": "323.2", "Coding Ratio (%)": "87.3", "Number of rRNAs": "1", "Number of tRNAs": "33", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhodoferax lacus", "strain": "strain=IMCC26218", "accession": "GCA_003415675.1", "taxid": 2184758, "species_taxid": 2184758, "relation_to_type": "type", "validated": true, "ani": 79.3419, "matched_fragments": 459, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax ferrireducens", "strain": "strain=DSM 15236", "accession": "GCA_000013605.1", "taxid": 192843, "species_taxid": 192843, "relation_to_type": "type", "validated": true, "ani": 78.9549, "matched_fragments": 429, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax saidenbachensis", "strain": "strain=ED16", "accession": "GCA_000498435.1", "taxid": 1484693, "species_taxid": 1484693, "relation_to_type": "type", "validated": true, "ani": 78.9523, "matched_fragments": 445, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax saidenbachensis", "strain": "strain=DSM 22694", "accession": "GCA_001955715.1", "taxid": 1484693, "species_taxid": 1484693, "relation_to_type": "type", "validated": true, "ani": 78.9296, "matched_fragments": 458, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax bucti", "strain": "strain=GSA243-2", "accession": "GCA_005876985.1", "taxid": 2576305, "species_taxid": 2576305, "relation_to_type": "type", "validated": true, "ani": 78.65, "matched_fragments": 420, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax fermentans", "strain": "strain=JCM 7819", "accession": "GCA_002017865.1", "taxid": 28066, "species_taxid": 28066, "relation_to_type": "type", "validated": true, "ani": 78.526, "matched_fragments": 377, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Curvibacter lanceolatus", "strain": "strain=ATCC 14669", "accession": "GCA_000381265.1", "taxid": 86182, "species_taxid": 86182, "relation_to_type": "type", "validated": true, "ani": 78.311, "matched_fragments": 405, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax carolinensis", "strain": "strain=NA3", "accession": "GCA_002157145.1", "taxid": 553814, "species_taxid": 553814, "relation_to_type": "type", "validated": true, "ani": 78.2824, "matched_fragments": 373, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Curvibacter gracilis", "strain": "strain=ATCC BAA-807", "accession": "GCA_000518645.1", "taxid": 230310, "species_taxid": 230310, "relation_to_type": "type", "validated": true, "ani": 78.2521, "matched_fragments": 400, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax temperans", "strain": "strain=DSM 7270", "accession": "GCA_006716905.1", "taxid": 80878, "species_taxid": 80878, "relation_to_type": "type", "validated": true, "ani": 78.2085, "matched_fragments": 367, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax kalamii", "strain": "strain=KNDSW-TSA6", "accession": "GCA_002245625.1", "taxid": 2004485, "species_taxid": 2004485, "relation_to_type": "type", "validated": true, "ani": 78.1964, "matched_fragments": 383, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax delafieldii", "strain": "strain=DSM 64", "accession": "GCA_007993815.1", "taxid": 47920, "species_taxid": 47920, "relation_to_type": "type", "validated": true, "ani": 78.0747, "matched_fragments": 389, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaromonas naphthalenivorans", "strain": "strain=CJ2", "accession": "GCA_000015505.1", "taxid": 216465, "species_taxid": 216465, "relation_to_type": "type", "validated": true, "ani": 78.039, "matched_fragments": 364, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga borbori", "strain": "strain=LA-38", "accession": "GCA_003417535.1", "taxid": 2294117, "species_taxid": 2294117, "relation_to_type": "type", "validated": true, "ani": 77.8458, "matched_fragments": 328, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax aquaticus", "strain": "strain=Gr-4", "accession": "GCA_006974105.1", "taxid": 2527691, "species_taxid": 2527691, "relation_to_type": "type", "validated": true, "ani": 77.7045, "matched_fragments": 308, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Variovorax boronicumulans", "strain": "strain=NBRC 103145", "accession": "GCA_001591345.1", "taxid": 436515, "species_taxid": 436515, "relation_to_type": "type", "validated": true, "ani": 77.5832, "matched_fragments": 322, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas kerstersii", "strain": "strain=CCUG 15333", "accession": "GCA_008801935.1", "taxid": 225992, "species_taxid": 225992, "relation_to_type": "type", "validated": true, "ani": 77.4468, "matched_fragments": 224, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas avium", "strain": "strain=Sa2CVA6", "accession": "GCA_014836675.1", "taxid": 2762231, "species_taxid": 2762231, "relation_to_type": "type", "validated": true, "ani": 77.4417, "matched_fragments": 190, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Verminephrobacter aporrectodeae subsp. tuberculatae", "strain": "strain=At4", "accession": "GCA_000193225.2", "taxid": 1110392, "species_taxid": 1110389, "relation_to_type": "type", "validated": true, "ani": 77.2306, "matched_fragments": 195, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas fluminis", "strain": "strain=CJ34", "accession": "GCA_019186805.1", "taxid": 2796366, "species_taxid": 2796366, "relation_to_type": "type", "validated": true, "ani": 77.219, "matched_fragments": 259, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serpentinimonas barnesii", "strain": "strain=H1", "accession": "GCA_000696225.1", "taxid": 1458427, "species_taxid": 1458427, "relation_to_type": "type", "validated": true, "ani": 77.2075, "matched_fragments": 224, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Diaphorobacter aerolatus", "strain": "strain=KACC 16536", "accession": "GCA_014489535.1", "taxid": 1288495, "species_taxid": 1288495, "relation_to_type": "type", "validated": true, "ani": 77.1672, "matched_fragments": 185, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Diaphorobacter caeni", "strain": "strain=NR2-3-3-1", "accession": "GCA_015354245.1", "taxid": 2784387, "species_taxid": 2784387, "relation_to_type": "type", "validated": true, "ani": 76.6971, "matched_fragments": 227, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.46, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_903960915.1", "gtdb_species": "s__Rhodoferax sp903960915", "ani": 99.872, "matched_fragments": 1083, "total_fragments": 1203, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Rhodoferax", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.23", "min_intra_species_ani": "97.99", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.81", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCF_003347515.1", "gtdb_species": "s__Rhodoferax sp003347515", "ani": 79.4774, "matched_fragments": 507, "total_fragments": 1203, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Rhodoferax", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_012927445.1", "gtdb_species": "s__Rhodoferax sp012927445", "ani": 79.4584, "matched_fragments": 474, "total_fragments": 1203, "gtdb_taxonomy": 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