{ "type": "genome", "identifier": "GCA_903940565.1", "organism": "uncultured beta proteobacterium", "title": "uncultured beta proteobacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903940565.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6946446", "wgs_master": "CAJALK000000000.1", "refseq_category": "na", "taxid": "86027", "species_taxid": "86027", "organism_name": "uncultured beta proteobacterium", "infraspecific_name": "", "isolate": "Loc090116-1m_bin-0752", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/18", "asm_name": "freshwater MAG --- Loc090116-1m_bin-0752", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/940/565/GCA_903940565.1_freshwater_MAG_---_Loc090116-1m_bin-0752", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-18", "dateModified": "2020-07-18", "datePublished": "2020-07-18", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured beta proteobacterium" ], "sample_taxid": [ "86027" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Switzerland" ], "sample_host_location_id": [], "data_size": "0.625 MB", "sample_ph_range": { "min": 8.0, "max": 8.0 }, "sample_temperature_range": { "min": 33.0, "max": 33.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2177854", "Number of Sequences": "111", "Longest Sequences (bp)": "176164", "N50 (bp)": "50775", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.2", "Number of CDSs": "2014", "Average Protein Length": "315.4", "Coding Ratio (%)": "87.5", "Number of rRNAs": "0", "Number of tRNAs": "34", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Polynucleobacter sphagniphilus", "strain": "strain=MWH-Weng1-1", "accession": "GCA_001953355.1", "taxid": 1743169, "species_taxid": 1743169, "relation_to_type": "type", "validated": true, "ani": 77.7473, "matched_fragments": 93, "total_fragments": 660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter difficilis", "strain": "strain=AM-8B5", "accession": "GCA_003065365.1", "taxid": 556054, "species_taxid": 556054, "relation_to_type": "type", "validated": true, "ani": 77.6542, "matched_fragments": 96, "total_fragments": 660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter yangtzensis", "strain": "strain=MWH-JaK3", "accession": "GCA_001595965.1", "taxid": 1743159, "species_taxid": 1743159, "relation_to_type": "type", "validated": true, "ani": 77.6135, "matched_fragments": 98, "total_fragments": 660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter paludilacus", "strain": "strain=MWH-Mekk-C3", "accession": "GCA_018687595.1", "taxid": 1855895, "species_taxid": 1855895, "relation_to_type": "type", "validated": true, "ani": 77.541, "matched_fragments": 83, "total_fragments": 660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter ibericus", "strain": "strain=es-MAR-2", "accession": "GCA_018687955.1", "taxid": 1819725, "species_taxid": 1819725, "relation_to_type": "type", "validated": true, "ani": 77.4183, "matched_fragments": 89, "total_fragments": 660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter bastaniensis", "strain": "strain=AP-Basta-1000A-D1", "accession": "GCA_018882205.1", "taxid": 2081039, "species_taxid": 2081039, "relation_to_type": "type", "validated": true, "ani": 77.3553, "matched_fragments": 99, "total_fragments": 660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter wuianus", "strain": "strain=QLW-P1FAT50C-4", "accession": "GCA_001659725.1", "taxid": 1743168, "species_taxid": 1743168, "relation_to_type": "type", "validated": true, "ani": 77.3391, "matched_fragments": 96, "total_fragments": 660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter finlandensis", "strain": "strain=MWH-Mekk-B1", "accession": "GCA_018881755.1", "taxid": 1855894, "species_taxid": 1855894, "relation_to_type": "type", "validated": true, "ani": 77.2614, "matched_fragments": 108, "total_fragments": 660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter hirudinilacicola", "strain": "strain=MWH-EgelM1-30-B4", "accession": "GCA_002192535.1", "taxid": 1743166, "species_taxid": 1743166, "relation_to_type": "type", "validated": true, "ani": 77.2409, "matched_fragments": 113, "total_fragments": 660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter sinensis", "strain": "strain=MWH-HuW1", "accession": "GCA_001595985.1", "taxid": 1743157, "species_taxid": 1743157, "relation_to_type": "type", "validated": true, "ani": 77.1871, "matched_fragments": 118, "total_fragments": 660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter campilacus", "strain": "strain=MWH-Feld-100", "accession": "GCA_002206625.1", "taxid": 1743163, "species_taxid": 1743163, "relation_to_type": "type", "validated": true, "ani": 77.1452, "matched_fragments": 113, "total_fragments": 660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter nymphae", "strain": "strain=AP-Mumm-500A-B3", "accession": "GCA_018882155.1", "taxid": 2081043, "species_taxid": 2081043, "relation_to_type": "type", "validated": true, "ani": 77.1407, "matched_fragments": 117, "total_fragments": 660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter corsicus", "strain": "strain=AP-Melu-1000-A1", "accession": "GCA_018688255.1", "taxid": 2081042, "species_taxid": 2081042, "relation_to_type": "type", "validated": true, "ani": 77.125, "matched_fragments": 107, "total_fragments": 660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter arcticus", "strain": "strain=UK-Long2-W17", "accession": "GCA_013307205.1", "taxid": 1743165, "species_taxid": 1743165, "relation_to_type": "type", "validated": true, "ani": 77.1029, "matched_fragments": 98, "total_fragments": 660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter duraquae", "strain": "strain=MWH-MoK4", "accession": "GCA_000973625.1", "taxid": 1835254, "species_taxid": 1835254, "relation_to_type": "type", "validated": true, "ani": 77.1023, "matched_fragments": 114, "total_fragments": 660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter tropicus", "strain": "strain=MWH-UH21B", "accession": "GCA_013307225.1", "taxid": 1743174, "species_taxid": 1743174, "relation_to_type": "type", "validated": true, "ani": 77.0876, "matched_fragments": 105, "total_fragments": 660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter antarcticus", "strain": "strain=LimPoW16", "accession": "GCA_013307245.1", "taxid": 1743162, "species_taxid": 1743162, "relation_to_type": "type", "validated": true, "ani": 77.0714, "matched_fragments": 115, "total_fragments": 660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter 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