{ "type": "genome", "identifier": "GCA_903940765.1", "organism": "uncultured beta proteobacterium", "title": "uncultured beta proteobacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903940765.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6945548", "wgs_master": "CAJAME000000000.1", "refseq_category": "na", "taxid": "86027", "species_taxid": "86027", "organism_name": "uncultured beta proteobacterium", "infraspecific_name": "", "isolate": "Loc080925-7m_bin-0454", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/20", "asm_name": "freshwater MAG --- Loc080925-7m_bin-0454", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/940/765/GCA_903940765.1_freshwater_MAG_---_Loc080925-7m_bin-0454", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-20", "dateModified": "2020-07-20", "datePublished": "2020-07-20", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured beta proteobacterium" ], "sample_taxid": [ "86027" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Switzerland" ], "sample_host_location_id": [], "data_size": "1.345 MB", "sample_ph_range": { "min": 739.0, "max": 739.0 }, "sample_temperature_range": { "min": 135.0, "max": 135.0 }, "completeness": 81.83, "contamination": 0.38, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4942262", "Number of Sequences": "766", "Longest Sequences (bp)": "36223", "N50 (bp)": "9013", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.3", "Number of CDSs": "3928", "Average Protein Length": "312.7", "Coding Ratio (%)": "74.6", "Number of rRNAs": "0", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rubrivivax benzoatilyticus", "strain": "strain=JA2", "accession": "GCA_000420125.1", "taxid": 316997, "species_taxid": 316997, "relation_to_type": "type", "validated": true, "ani": 80.7255, "matched_fragments": 584, "total_fragments": 1243, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubrivivax gelatinosus", "strain": "strain=DSM 1709", "accession": "GCA_016583525.1", "taxid": 28068, "species_taxid": 28068, "relation_to_type": "suspected-type", "validated": true, "ani": 80.7089, "matched_fragments": 578, "total_fragments": 1243, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubrivivax benzoatilyticus", "strain": "strain=JA2", "accession": "GCA_000190375.2", "taxid": 316997, "species_taxid": 316997, "relation_to_type": "type", "validated": true, "ani": 80.7057, "matched_fragments": 575, "total_fragments": 1243, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubrivivax gelatinosus", "strain": "strain=DSM 1709", "accession": "GCA_004340905.1", "taxid": 28068, "species_taxid": 28068, "relation_to_type": "suspected-type", "validated": true, "ani": 80.5957, "matched_fragments": 597, "total_fragments": 1243, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Schlegelella thermodepolymerans", "strain": "strain=DSM 15344", "accession": "GCA_003349825.1", "taxid": 215580, "species_taxid": 215580, "relation_to_type": "type", "validated": true, "ani": 79.7575, "matched_fragments": 481, "total_fragments": 1243, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Schlegelella thermodepolymerans", "strain": "strain=DSM 15344", "accession": "GCA_002933415.1", "taxid": 215580, "species_taxid": 215580, "relation_to_type": "type", "validated": true, "ani": 79.6959, "matched_fragments": 487, "total_fragments": 1243, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ideonella dechloratans", "strain": "strain=CCUG 30977", "accession": "GCA_008801845.1", "taxid": 36863, "species_taxid": 36863, "relation_to_type": "type", "validated": true, "ani": 79.6301, "matched_fragments": 450, "total_fragments": 1243, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Schlegelella thermodepolymerans", "strain": "strain=DSM 15344", "accession": "GCA_015476235.1", "taxid": 215580, "species_taxid": 215580, "relation_to_type": "type", "validated": true, "ani": 79.6145, "matched_fragments": 487, "total_fragments": 1243, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ideonella dechloratans", "strain": "strain=CCUG 30977", "accession": "GCA_021049305.1", "taxid": 36863, "species_taxid": 36863, "relation_to_type": "type", "validated": true, "ani": 79.5904, "matched_fragments": 466, "total_fragments": 1243, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azohydromonas aeria", "strain": "strain=CFCC 13393", "accession": "GCA_009760915.1", "taxid": 2590212, "species_taxid": 2590212, "relation_to_type": "type", "validated": true, "ani": 79.4948, "matched_fragments": 579, "total_fragments": 1243, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerotilus montanus", "strain": "strain=DSM 21226", "accession": "GCA_013410775.1", "taxid": 522889, "species_taxid": 522889, "relation_to_type": "type", "validated": true, "ani": 79.4791, "matched_fragments": 452, "total_fragments": 1243, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerotilus montanus", "strain": "strain=HS", "accession": "GCA_013426955.1", "taxid": 522889, "species_taxid": 522889, "relation_to_type": "type", "validated": true, "ani": 79.4748, "matched_fragments": 448, "total_fragments": 1243, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerotilus natans", "strain": "strain=ATCC 13338", "accession": "GCA_900156335.1", "taxid": 34103, "species_taxid": 34103, "relation_to_type": "type", "validated": true, "ani": 79.4525, "matched_fragments": 487, "total_fragments": 1243, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerotilus sulfidivorans", "strain": "strain=D-501", "accession": "GCA_013426975.1", "taxid": 639200, "species_taxid": 639200, "relation_to_type": "type", "validated": true, "ani": 79.4153, "matched_fragments": 483, "total_fragments": 1243, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerotilus hippei", "strain": "strain=DSM 566", "accession": "GCA_003201595.1", "taxid": 744406, "species_taxid": 744406, "relation_to_type": "type", "validated": true, "ani": 79.38, "matched_fragments": 443, "total_fragments": 1243, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ideonella benzenivorans", "strain": "strain=B7", "accession": "GCA_020387415.1", "taxid": 2831643, "species_taxid": 2831643, "relation_to_type": "type", "validated": true, "ani": 79.2859, "matched_fragments": 446, "total_fragments": 1243, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobacter gummiphilus", "strain": "strain=NBRC 109400", "accession": "GCA_002762215.1", "taxid": 946333, "species_taxid": 946333, "relation_to_type": "type", "validated": true, "ani": 79.2058, "matched_fragments": 498, "total_fragments": 1243, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelomonas puraquae", "strain": "strain=CCUG 52769", "accession": "GCA_002205845.1", "taxid": 431059, 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