{
    "type": "genome",
    "identifier": "GCA_903940785.1",
    "organism": "uncultured Chlorobiaceae bacterium",
    "title": "uncultured Chlorobiaceae bacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "BILS",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_903940785.1",
        "bioproject": "PRJEB38681",
        "biosample": "SAMEA6949953",
        "wgs_master": "CAJAMC000000000.1",
        "refseq_category": "na",
        "taxid": "243904",
        "species_taxid": "243904",
        "organism_name": "uncultured Chlorobiaceae bacterium",
        "infraspecific_name": "",
        "isolate": "E-4_bin-108",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/07/18",
        "asm_name": "freshwater MAG --- E-4_bin-108",
        "submitter": "BILS",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/940/785/GCA_903940785.1_freshwater_MAG_---_E-4_bin-108",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-07-18",
    "dateModified": "2020-07-18",
    "datePublished": "2020-07-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Chlorobiaceae bacterium"
        ],
        "sample_taxid": [
            "243904"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Canada"
        ],
        "sample_host_location_id": [],
        "data_size": "0.721 MB",
        "sample_ph_range": {
            "min": 604.0,
            "max": 604.0
        },
        "sample_temperature_range": {
            "min": 63.0,
            "max": 63.0
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2507086",
        "Number of Sequences": "106",
        "Longest Sequences (bp)": "107842",
        "N50 (bp)": "43845",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "46.0",
        "Number of CDSs": "2246",
        "Average Protein Length": "314.7",
        "Coding Ratio (%)": "84.6",
        "Number of rRNAs": "0",
        "Number of tRNAs": "43",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Pelodictyon phaeoclathratiforme",
                "strain": "strain=BU-1",
                "accession": "GCA_000020645.1",
                "taxid": 34090,
                "species_taxid": 34090,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.56,
                "matched_fragments": 390,
                "total_fragments": 782,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chlorobium ferrooxidans",
                "strain": "strain=DSM 13031",
                "accession": "GCA_000168715.1",
                "taxid": 84205,
                "species_taxid": 84205,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0374,
                "matched_fragments": 213,
                "total_fragments": 782,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chlorobium phaeobacteroides",
                "strain": "strain=DSM 266",
                "accession": "GCA_000015125.1",
                "taxid": 1096,
                "species_taxid": 1096,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2602,
                "matched_fragments": 147,
                "total_fragments": 782,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chlorobium limicola",
                "strain": "strain=DSM 245",
                "accession": "GCA_000020465.1",
                "taxid": 1092,
                "species_taxid": 1092,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9485,
                "matched_fragments": 109,
                "total_fragments": 782,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prosthecochloris aestuarii",
                "strain": "strain=DSM 271",
                "accession": "GCA_000020625.1",
                "taxid": 1102,
                "species_taxid": 1102,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2114,
                "matched_fragments": 58,
                "total_fragments": 782,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_903843305.1",
                "gtdb_species": "s__Chlorobium sp903843305",
                "ani": 96.9577,
                "matched_fragments": 674,
                "total_fragments": 782,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.98",
                "min_intra_species_ani": "96.88",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 17,
                "status": "conclusive"
            },
            {
                "accession": "GCA_903887845.1",
                "gtdb_species": "s__Chlorobium sp903887845",
                "ani": 84.8922,
                "matched_fragments": 561,
                "total_fragments": 782,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.96",
                "min_intra_species_ani": "99.96",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_903937835.1",
                "gtdb_species": "s__Chlorobium sp903937835",
                "ani": 84.7607,
                "matched_fragments": 515,
                "total_fragments": 782,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.77",
                "min_intra_species_ani": "99.60",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_903836465.1",
                "gtdb_species": "s__Chlorobium sp903836465",
                "ani": 84.7599,
                "matched_fragments": 555,
                "total_fragments": 782,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.30",
                "min_intra_species_ani": "97.63",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 12,
                "status": "-"
            },
            {
                "accession": "GCA_903929845.1",
                "gtdb_species": "s__Chlorobium sp903929845",
                "ani": 84.4816,
                "matched_fragments": 387,
                "total_fragments": 782,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.53",
                "min_intra_species_ani": "99.40",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_903994455.1",
                "gtdb_species": "s__Chlorobium sp903994455",
                "ani": 83.8365,
                "matched_fragments": 467,
                "total_fragments": 782,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.65",
                "min_intra_species_ani": "99.40",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 13,
                "status": "-"
            },
            {
                "accession": "GCA_903915955.1",
                "gtdb_species": "s__Chlorobium sp903915955",
                "ani": 81.6111,
                "matched_fragments": 407,
                "total_fragments": 782,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.74",
                "min_intra_species_ani": "96.45",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 5,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.203,
        "cell_length": 0.048,
        "doubling_h": 0.283,
        "growth_tmp": 27.653,
        "optimum_tmp": 31.393,
        "optimum_ph": 5.975,
        "genome_size": 2525906.989,
        "gc_content": 52.738,
        "coding_genes": 2296.574,
        "rRNA16S_genes": 1.888,
        "tRNA_genes": 47.944,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 1.0,
        "facultative_respiration": 0.3,
        "anaerobic_respiration": 0.7,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 0.888,
        "thermophilic_range_tmp": 0.111,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.888,
        "coccus_cell_shape": 0.111,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Chlorobiia",
        "o__Chlorobiales",
        "f__Chlorobiaceae",
        "g__Chlorobium",
        "s__Chlorobium sp903843305"
    ],
    "_genome_taxon": [
        "uncultured",
        "Chlorobiaceae",
        "bacterium",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Chlorobiia",
        "o__Chlorobiales",
        "f__Chlorobiaceae",
        "g__Chlorobium",
        "s__Chlorobium sp903843305",
        "Bacteria",
        "Bacteroidota",
        "Chlorobiia",
        "Chlorobiales",
        "Chlorobiaceae",
        "Chlorobium",
        "Chlorobium",
        "sp903843305"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000027",
            "label": "pond"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}