{ "type": "genome", "identifier": "GCA_903941245.1", "organism": "uncultured Sphingomonadales bacterium", "title": "uncultured Sphingomonadales bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903941245.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6948920", "wgs_master": "CAJANW000000000.1", "refseq_category": "na", "taxid": "293405", "species_taxid": "293405", "organism_name": "uncultured Sphingomonadales bacterium", "infraspecific_name": "", "isolate": "Loc090402-4m_bin-0578", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/18", "asm_name": "freshwater MAG --- Loc090402-4m_bin-0578", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/941/245/GCA_903941245.1_freshwater_MAG_---_Loc090402-4m_bin-0578", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-18", "dateModified": "2020-07-18", "datePublished": "2020-07-18", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Sphingomonadales bacterium" ], "sample_taxid": [ "293405" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Switzerland" ], "sample_host_location_id": [], "data_size": "0.665 MB", "sample_ph_range": { "min": 804.0, "max": 804.0 }, "sample_temperature_range": { "min": 77.0, "max": 77.0 }, "completeness": 100.0, "contamination": 0.38, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2321280", "Number of Sequences": "291", "Longest Sequences (bp)": "44479", "N50 (bp)": "12841", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "55.2", "Number of CDSs": "1969", "Average Protein Length": "306.6", "Coding Ratio (%)": "78.0", "Number of rRNAs": "1", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sphingorhabdus wooponensis", "strain": "strain=03SU3-P", "accession": "GCA_003933235.1", "taxid": 940136, "species_taxid": 940136, "relation_to_type": "type", "validated": true, "ani": 81.402, "matched_fragments": 417, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingorhabdus rigui", "strain": "strain=DSM 29050", "accession": "GCA_014196595.1", "taxid": 1282858, "species_taxid": 1282858, "relation_to_type": "type", "validated": true, "ani": 80.6156, "matched_fragments": 398, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingorhabdus profundilacus", "strain": "strain=IMCC26285", "accession": "GCA_009769755.1", "taxid": 2509718, "species_taxid": 2509718, "relation_to_type": "type", "validated": true, "ani": 78.2644, "matched_fragments": 246, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingorhabdus lacus", "strain": "strain=IMCC1753", "accession": "GCA_009768975.1", "taxid": 392610, "species_taxid": 392610, "relation_to_type": "type", "validated": true, "ani": 78.142, "matched_fragments": 255, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingorhabdus contaminans", "strain": "strain=KCTC32445", "accession": "GCA_007280415.1", "taxid": 1343899, "species_taxid": 1343899, "relation_to_type": "type", "validated": true, "ani": 77.7249, "matched_fragments": 239, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingorhabdus pulchriflava", "strain": "strain=GY_G", "accession": "GCA_003367235.1", "taxid": 2292257, "species_taxid": 2292257, "relation_to_type": "type", "validated": true, "ani": 77.1423, "matched_fragments": 146, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas cavernae", "strain": "strain=K2R01-6", "accession": "GCA_003590775.1", "taxid": 2320861, "species_taxid": 2320861, "relation_to_type": "type", "validated": true, "ani": 76.4713, "matched_fragments": 63, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parasphingorhabdus marina", "strain": "strain=DSM 22363", "accession": "GCA_900128895.1", "taxid": 394732, "species_taxid": 394732, "relation_to_type": "type", "validated": true, "ani": 76.1898, "matched_fragments": 55, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium indicum", "strain": "strain=B90A", "accession": "GCA_000264945.2", "taxid": 332055, "species_taxid": 332055, "relation_to_type": "type", "validated": true, "ani": 76.1323, "matched_fragments": 55, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas hylomeconis", "strain": "strain=CCTCC AB 2013304", "accession": "GCA_025370105.1", "taxid": 1395958, "species_taxid": 1395958, "relation_to_type": "type", "validated": true, "ani": 76.1048, "matched_fragments": 61, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceicoccus sediminis", "strain": "strain=S2-4-2", "accession": "GCA_007570835.1", "taxid": 2571150, "species_taxid": 2571150, "relation_to_type": "type", "validated": true, "ani": 75.984, "matched_fragments": 57, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas carotinifaciens", "strain": "strain=DSM 27347", "accession": "GCA_009789535.1", "taxid": 1166323, "species_taxid": 1166323, "relation_to_type": "type", "validated": true, "ani": 75.9119, "matched_fragments": 58, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas carotinifaciens", "strain": "strain=DSM 27347", "accession": "GCA_014197095.1", "taxid": 1166323, "species_taxid": 1166323, "relation_to_type": "type", "validated": true, "ani": 75.9021, "matched_fragments": 58, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.38, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_903821685.1", "gtdb_species": "s__Sphingorhabdus_B sp903821685", "ani": 99.601, "matched_fragments": 527, "total_fragments": 616, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingorhabdus_B", 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