{
    "type": "genome",
    "identifier": "GCA_903944005.1",
    "organism": "uncultured bacterium",
    "title": "uncultured bacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "BILS",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_903944005.1",
        "bioproject": "PRJEB38681",
        "biosample": "SAMEA6943741",
        "wgs_master": "CAJAQE000000000.1",
        "refseq_category": "na",
        "taxid": "77133",
        "species_taxid": "77133",
        "organism_name": "uncultured bacterium",
        "infraspecific_name": "",
        "isolate": "Loc090721-5m_bin-034",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/07/17",
        "asm_name": "freshwater MAG --- Loc090721-5m_bin-034",
        "submitter": "BILS",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/944/005/GCA_903944005.1_freshwater_MAG_---_Loc090721-5m_bin-034",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-07-17",
    "dateModified": "2020-07-17",
    "datePublished": "2020-07-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured bacterium"
        ],
        "sample_taxid": [
            "77133"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Switzerland"
        ],
        "sample_host_location_id": [],
        "data_size": "0.513 MB",
        "sample_ph_range": {
            "min": 757.0,
            "max": 757.0
        },
        "sample_temperature_range": {
            "min": 136.0,
            "max": 136.0
        },
        "completeness": 60.77,
        "contamination": 0.52,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1845875",
        "Number of Sequences": "576",
        "Longest Sequences (bp)": "12761",
        "N50 (bp)": "3561",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "67.8",
        "Number of CDSs": "1324",
        "Average Protein Length": "280.9",
        "Coding Ratio (%)": "60.4",
        "Number of rRNAs": "1",
        "Number of tRNAs": "23",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 60.77,
            "contamination": 0.52,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_903954205.1",
                "gtdb_species": "s__Mxb001 sp903954205",
                "ani": 97.8992,
                "matched_fragments": 247,
                "total_fragments": 296,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__S36-B12;g__Mxb001",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.46",
                "min_intra_species_ani": "98.20",
                "mean_intra_species_af": "0.79",
                "min_intra_species_af": "0.70",
                "num_clustered_genomes": 14,
                "status": "conclusive"
            },
            {
                "accession": "GCA_016870425.1",
                "gtdb_species": "s__Mxb001 sp016870425",
                "ani": 80.9774,
                "matched_fragments": 204,
                "total_fragments": 296,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__S36-B12;g__Mxb001",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004379115.1",
                "gtdb_species": "s__Mxb001 sp004379115",
                "ani": 78.8756,
                "matched_fragments": 151,
                "total_fragments": 296,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__S36-B12;g__Mxb001",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903848435.1",
                "gtdb_species": "s__Mxb001 sp903848435",
                "ani": 78.6077,
                "matched_fragments": 111,
                "total_fragments": 296,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__S36-B12;g__Mxb001",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.93",
                "min_intra_species_ani": "95.89",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.74",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_903909555.1",
                "gtdb_species": "s__Mxb001 sp903909555",
                "ani": 78.6029,
                "matched_fragments": 136,
                "total_fragments": 296,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__S36-B12;g__Mxb001",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.15",
                "min_intra_species_ani": "99.05",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_016870515.1",
                "gtdb_species": "s__Mxb001 sp016870515",
                "ani": 78.4216,
                "matched_fragments": 147,
                "total_fragments": 296,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__S36-B12;g__Mxb001",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903934925.1",
                "gtdb_species": "s__UBA10649 sp903934925",
                "ani": 77.0512,
                "matched_fragments": 50,
                "total_fragments": 296,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__S36-B12;g__UBA10649",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.42",
                "min_intra_species_ani": "99.35",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_903908025.1",
                "gtdb_species": "s__UBA10649 sp903908025",
                "ani": 76.9776,
                "matched_fragments": 65,
                "total_fragments": 296,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__S36-B12;g__UBA10649",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.87",
                "min_intra_species_ani": "97.91",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_009699015.1",
                "gtdb_species": "s__WLND01 sp009699015",
                "ani": 76.7882,
                "matched_fragments": 56,
                "total_fragments": 296,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__S36-B12;g__WLND01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.95",
                "min_intra_species_ani": "98.95",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900659615.1",
                "gtdb_species": "s__Spirillospora fibrosa",
                "ani": 75.4579,
                "matched_fragments": 52,
                "total_fragments": 296,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Actinomycetes",
        "o__S36-B12",
        "f__S36-B12",
        "g__Mxb001",
        "s__Mxb001 sp903954205"
    ],
    "_genome_taxon": [
        "uncultured",
        "bacterium",
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Actinomycetes",
        "o__S36-B12",
        "f__S36-B12",
        "g__Mxb001",
        "s__Mxb001 sp903954205",
        "Bacteria",
        "Actinomycetota",
        "Actinomycetes",
        "S36-B12",
        "S36-B12",
        "Mxb001",
        "Mxb001",
        "sp903954205"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}