{ "type": "genome", "identifier": "GCA_903944205.1", "organism": "uncultured Burkholderiales bacterium", "title": "uncultured Burkholderiales bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903944205.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6947695", "wgs_master": "CAJAQZ000000000.1", "refseq_category": "na", "taxid": "208544", "species_taxid": "208544", "organism_name": "uncultured Burkholderiales bacterium", "infraspecific_name": "", "isolate": "Loc081215-9m_bin-2417", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/17", "asm_name": "freshwater MAG --- Loc081215-9m_bin-2417", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/944/205/GCA_903944205.1_freshwater_MAG_---_Loc081215-9m_bin-2417", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-17", "dateModified": "2020-07-17", "datePublished": "2020-07-17", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Burkholderiales bacterium" ], "sample_taxid": [ "208544" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Switzerland" ], "sample_host_location_id": [], "data_size": "0.454 MB", "sample_ph_range": { "min": 772.0, "max": 772.0 }, "sample_temperature_range": { "min": 48.0, "max": 48.0 }, "completeness": 42.72, "contamination": 4.55, "strain_heterogeneity": 50.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1639241", "Number of Sequences": "624", "Longest Sequences (bp)": "10701", "N50 (bp)": "2690", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.4", "Number of CDSs": "1014", "Average Protein Length": "273.5", "Coding Ratio (%)": "50.8", "Number of rRNAs": "0", "Number of tRNAs": "16", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhizobacter gummiphilus", "strain": "strain=NS21", "accession": "GCA_002116905.1", "taxid": 946333, "species_taxid": 946333, "relation_to_type": "type", "validated": true, "ani": 79.2794, "matched_fragments": 102, "total_fragments": 170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobacter gummiphilus", "strain": "strain=NBRC 109400", "accession": "GCA_002762215.1", "taxid": 946333, "species_taxid": 946333, "relation_to_type": "type", "validated": true, "ani": 79.2794, "matched_fragments": 102, "total_fragments": 170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Schlegelella thermodepolymerans", "strain": "strain=DSM 15344", "accession": "GCA_015476235.1", "taxid": 215580, "species_taxid": 215580, "relation_to_type": "type", "validated": true, "ani": 79.0088, "matched_fragments": 94, "total_fragments": 170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Schlegelella thermodepolymerans", "strain": "strain=DSM 15344", "accession": "GCA_003349825.1", "taxid": 215580, "species_taxid": 215580, "relation_to_type": "type", "validated": true, "ani": 78.8947, "matched_fragments": 97, "total_fragments": 170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Schlegelella thermodepolymerans", "strain": "strain=DSM 15344", "accession": "GCA_002933415.1", "taxid": 215580, "species_taxid": 215580, "relation_to_type": "type", "validated": true, "ani": 78.8817, "matched_fragments": 96, "total_fragments": 170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubrivivax gelatinosus", "strain": "strain=DSM 1709", "accession": "GCA_004340905.1", "taxid": 28068, "species_taxid": 28068, "relation_to_type": "suspected-type", "validated": true, "ani": 78.8779, "matched_fragments": 104, "total_fragments": 170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubrivivax gelatinosus", "strain": "strain=DSM 1709", "accession": "GCA_016583525.1", "taxid": 28068, "species_taxid": 28068, "relation_to_type": "suspected-type", "validated": true, "ani": 78.853, "matched_fragments": 105, "total_fragments": 170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubrivivax benzoatilyticus", "strain": "strain=JA2", "accession": "GCA_000190375.2", "taxid": 316997, "species_taxid": 316997, "relation_to_type": "type", "validated": true, "ani": 78.7888, "matched_fragments": 100, "total_fragments": 170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelomonas puraquae", "strain": "strain=CCUG 52769", "accession": "GCA_002205845.1", "taxid": 431059, "species_taxid": 431059, "relation_to_type": "type", "validated": true, "ani": 78.7413, "matched_fragments": 94, "total_fragments": 170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga borbori", "strain": "strain=LA-38", "accession": "GCA_003417535.1", "taxid": 2294117, "species_taxid": 2294117, "relation_to_type": "type", "validated": true, "ani": 78.0225, "matched_fragments": 81, "total_fragments": 170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter algicola", "strain": "strain=CrO1", "accession": "GCA_016641735.1", "taxid": 2795217, "species_taxid": 2795217, "relation_to_type": "type", "validated": true, "ani": 77.6778, "matched_fragments": 67, "total_fragments": 170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter alkalitolerans", "strain": "strain=KACC 19305", "accession": "GCA_016722765.1", "taxid": 2039631, "species_taxid": 2039631, "relation_to_type": "type", "validated": true, "ani": 77.6035, "matched_fragments": 75, "total_fragments": 170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia mucilaginosa", "strain": "strain=CCM 8733", "accession": "GCA_011682145.1", "taxid": 2609282, "species_taxid": 2609282, "relation_to_type": "type", "validated": true, "ani": 76.6263, "matched_fragments": 51, "total_fragments": 170, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 42.72, "contamination": 4.55, "strain_heterogeneity": 50.0 }, "gtdb_result": [ { "accession": "GCA_903905475.1", "gtdb_species": "s__PBB1 sp903905475", "ani": 98.9369, "matched_fragments": 167, "total_fragments": 170, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__PBB1", "ani_circumscription_radius": 95.0, 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