{ "type": "genome", "identifier": "GCA_903944975.1", "organism": "uncultured Alphaproteobacteria bacterium", "title": "uncultured Alphaproteobacteria bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903944975.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6945412", "wgs_master": "CAJATY000000000.1", "refseq_category": "na", "taxid": "91750", "species_taxid": "91750", "organism_name": "uncultured Alphaproteobacteria bacterium", "infraspecific_name": "", "isolate": "Loc090116-4m_bin-1340", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/17", "asm_name": "freshwater MAG --- Loc090116-4m_bin-1340", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/944/975/GCA_903944975.1_freshwater_MAG_---_Loc090116-4m_bin-1340", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-17", "dateModified": "2020-07-17", "datePublished": "2020-07-17", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Alphaproteobacteria bacterium" ], "sample_taxid": [ "91750" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Switzerland" ], "sample_host_location_id": [], "data_size": "0.483 MB", "sample_ph_range": { "min": 78.0, "max": 78.0 }, "sample_temperature_range": { "min": 35.0, "max": 35.0 }, "completeness": 43.17, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1737777", "Number of Sequences": "673", "Longest Sequences (bp)": "7856", "N50 (bp)": "2637", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.5", "Number of CDSs": "1168", "Average Protein Length": "244.0", "Coding Ratio (%)": "49.2", "Number of rRNAs": "0", "Number of tRNAs": "22", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Brevundimonas alba", "strain": "strain=DSM 4736", "accession": "GCA_011927945.1", "taxid": 74314, "species_taxid": 74314, "relation_to_type": "type", "validated": true, "ani": 83.6668, "matched_fragments": 144, "total_fragments": 175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas lenta", "strain": "strain=DSM 23960", "accession": "GCA_014196335.1", "taxid": 424796, "species_taxid": 424796, "relation_to_type": "type", "validated": true, "ani": 83.5762, "matched_fragments": 146, "total_fragments": 175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas basaltis", "strain": "strain=DSM 25335", "accession": "GCA_014202075.1", "taxid": 472166, "species_taxid": 472166, "relation_to_type": "type", "validated": true, "ani": 83.4064, "matched_fragments": 138, "total_fragments": 175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas viscosa", "strain": "strain=CGMCC 1.10683", "accession": "GCA_900116065.1", "taxid": 871741, "species_taxid": 871741, "relation_to_type": "type", "validated": true, "ani": 82.2682, "matched_fragments": 141, "total_fragments": 175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas subvibrioides", "strain": "strain=ATCC 15264", "accession": "GCA_000144605.1", "taxid": 74313, "species_taxid": 74313, "relation_to_type": "type", "validated": true, "ani": 81.1983, "matched_fragments": 136, "total_fragments": 175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas bullata", "strain": "strain=HAMBI_262", "accession": "GCA_003350205.1", "taxid": 13160, "species_taxid": 13160, "relation_to_type": "type", "validated": true, "ani": 80.998, "matched_fragments": 121, "total_fragments": 175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas albigilva", "strain": "strain=KEME 9005-016", "accession": "GCA_023503965.1", "taxid": 1312364, "species_taxid": 1312364, "relation_to_type": "type", "validated": true, "ani": 80.8555, "matched_fragments": 123, "total_fragments": 175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas halotolerans", "strain": "strain=MCS24", "accession": "GCA_003730275.1", "taxid": 69670, "species_taxid": 69670, "relation_to_type": "type", "validated": true, "ani": 80.7243, "matched_fragments": 114, "total_fragments": 175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas fluminis", "strain": "strain=LA-55", "accession": "GCA_003934285.1", "taxid": 2487274, "species_taxid": 2487274, "relation_to_type": "type", "validated": true, "ani": 80.605, "matched_fragments": 116, "total_fragments": 175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas guildfordensis", "strain": "strain=Sa3CVA3", "accession": "GCA_014836405.1", "taxid": 2762241, "species_taxid": 2762241, "relation_to_type": "type", "validated": true, "ani": 80.5593, "matched_fragments": 106, "total_fragments": 175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas variabilis", "strain": "strain=DSM 4737", "accession": "GCA_014199945.1", "taxid": 74312, "species_taxid": 74312, "relation_to_type": "type", "validated": true, "ani": 80.3704, "matched_fragments": 103, "total_fragments": 175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas vitisensis", "strain": "strain=GR-TSA-9", "accession": "GCA_016656965.1", "taxid": 2800818, "species_taxid": 2800818, "relation_to_type": "type", "validated": true, "ani": 80.1378, "matched_fragments": 123, "total_fragments": 175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas bacteroides", "strain": "strain=DSM 4726", "accession": "GCA_000701445.1", "taxid": 74311, "species_taxid": 74311, "relation_to_type": "type", "validated": true, "ani": 80.0644, "matched_fragments": 125, "total_fragments": 175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas pishanensis", "strain": "strain=CHPC 1.3453", "accession": "GCA_022750635.1", "taxid": 2896315, "species_taxid": 2896315, "relation_to_type": "type", "validated": true, "ani": 78.4813, "matched_fragments": 57, "total_fragments": 175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phenylobacterium aquaticum", "strain": "strain=KACC 18306", "accession": "GCA_022695515.1", "taxid": 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"vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__Caulobacterales", "f__Caulobacteraceae", "g__Brevundimonas", "s__Brevundimonas sp030285985" ], "_genome_taxon": [ "uncultured", "Alphaproteobacteria", "bacterium", "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__Caulobacterales", "f__Caulobacteraceae", "g__Brevundimonas", "s__Brevundimonas sp030285985", "Bacteria", "Pseudomonadota", "Alphaproteobacteria", "Caulobacterales", "Caulobacteraceae", "Brevundimonas", "Brevundimonas", "sp030285985" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }