{ "type": "genome", "identifier": "GCA_903945585.1", "organism": "uncultured Caulobacterales bacterium", "title": "uncultured Caulobacterales bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903945585.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6945203", "wgs_master": "CAJAWI000000000.1", "refseq_category": "na", "taxid": "395523", "species_taxid": "395523", "organism_name": "uncultured Caulobacterales bacterium", "infraspecific_name": "", "isolate": "I-3_bin-201", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/19", "asm_name": "freshwater MAG --- I-3_bin-201", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/945/585/GCA_903945585.1_freshwater_MAG_---_I-3_bin-201", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-19", "dateModified": "2020-07-19", "datePublished": "2020-07-19", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Caulobacterales bacterium" ], "sample_taxid": [ "395523" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada" ], "sample_host_location_id": [], "data_size": "1.055 MB", "sample_ph_range": { "min": 475.0, "max": 475.0 }, "sample_temperature_range": { "min": 113.0, "max": 113.0 }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3725544", "Number of Sequences": "229", "Longest Sequences (bp)": "100611", "N50 (bp)": "25710", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.6", "Number of CDSs": "3180", "Average Protein Length": "325.6", "Coding Ratio (%)": "83.4", "Number of rRNAs": "1", "Number of tRNAs": "46", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Brevundimonas alba", "strain": "strain=DSM 4736", "accession": "GCA_011927945.1", "taxid": 74314, "species_taxid": 74314, "relation_to_type": "type", "validated": true, "ani": 76.4494, "matched_fragments": 82, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter henricii", "strain": "strain=CB4", "accession": "GCA_001414055.1", "taxid": 69395, "species_taxid": 69395, "relation_to_type": "type", "validated": true, "ani": 76.4421, "matched_fragments": 125, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter soli", "strain": "strain=Ji-3-8", "accession": "GCA_011045195.1", "taxid": 2708539, "species_taxid": 2708539, "relation_to_type": "type", "validated": true, "ani": 76.4299, "matched_fragments": 121, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas bacteroides", "strain": "strain=DSM 4726", "accession": "GCA_000701445.1", "taxid": 74311, "species_taxid": 74311, "relation_to_type": "type", "validated": true, "ani": 76.42, "matched_fragments": 67, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter hibisci", "strain": "strain=KACC 18849", "accession": "GCA_016135805.1", "taxid": 2035993, "species_taxid": 2035993, "relation_to_type": "type", "validated": true, "ani": 76.3967, "matched_fragments": 124, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter vibrioides", "strain": "strain=DSM 9893", "accession": "GCA_002858865.1", "taxid": 155892, "species_taxid": 155892, "relation_to_type": "type", "validated": true, "ani": 76.3696, "matched_fragments": 113, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phenylobacterium hankyongense", "strain": "strain=HKS-05", "accession": "GCA_003254505.1", "taxid": 1813876, "species_taxid": 1813876, "relation_to_type": "type", "validated": true, "ani": 76.3486, "matched_fragments": 99, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter mirabilis", "strain": "strain=FWC 38", "accession": "GCA_002749615.1", "taxid": 69666, "species_taxid": 69666, "relation_to_type": "type", "validated": true, "ani": 76.3207, "matched_fragments": 102, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter radicis", "strain": "strain=695", "accession": "GCA_003094615.1", "taxid": 2172650, "species_taxid": 2172650, "relation_to_type": "type", "validated": true, "ani": 76.3128, "matched_fragments": 121, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas vesicularis", "strain": "strain=NBRC 12165", "accession": "GCA_001592205.1", "taxid": 41276, "species_taxid": 41276, "relation_to_type": "suspected-type", "validated": true, "ani": 76.3026, "matched_fragments": 81, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phenylobacterium soli", "strain": "strain=LX32", "accession": "GCA_003254475.1", "taxid": 2170551, "species_taxid": 2170551, "relation_to_type": "type", "validated": true, "ani": 76.2544, "matched_fragments": 106, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas guildfordensis", "strain": "strain=Sa3CVA3", "accession": "GCA_014836405.1", "taxid": 2762241, "species_taxid": 2762241, "relation_to_type": "type", "validated": true, "ani": 76.2346, "matched_fragments": 80, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter zeae", "strain": "strain=410", "accession": "GCA_002858925.1", "taxid": 2055137, "species_taxid": 2055137, "relation_to_type": "type", "validated": true, "ani": 76.17, "matched_fragments": 116, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas lenta", "strain": "strain=DSM 23960", "accession": "GCA_014196335.1", "taxid": 424796, "species_taxid": 424796, "relation_to_type": "type", "validated": true, "ani": 76.1514, "matched_fragments": 74, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter endophyticus", "strain": "strain=774", "accession": "GCA_003116815.1", "taxid": 2172652, "species_taxid": 2172652, 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75.9067, "matched_fragments": 128, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter flavus", "strain": "strain=RHGG3", "accession": "GCA_003722335.1", "taxid": 1679497, "species_taxid": 1679497, "relation_to_type": "type", "validated": true, "ani": 75.8932, "matched_fragments": 131, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_903840435.1", "gtdb_species": "s__CAIMFV01 sp903840435", "ani": 99.6963, "matched_fragments": 1035, "total_fragments": 1130, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__CAIMFV01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.80", "min_intra_species_ani": "99.59", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.92", "num_clustered_genomes": 5, 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