{ "type": "genome", "identifier": "GCA_903953995.1", "organism": "uncultured beta proteobacterium", "title": "uncultured beta proteobacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903953995.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6944474", "wgs_master": "CAJBLY000000000.1", "refseq_category": "na", "taxid": "86027", "species_taxid": "86027", "organism_name": "uncultured beta proteobacterium", "infraspecific_name": "", "isolate": "Loc090402-1m_bin-0126", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/19", "asm_name": "freshwater MAG --- Loc090402-1m_bin-0126", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/953/995/GCA_903953995.1_freshwater_MAG_---_Loc090402-1m_bin-0126", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-19", "dateModified": "2020-07-19", "datePublished": "2020-07-19", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured beta proteobacterium" ], "sample_taxid": [ "86027" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Switzerland" ], "sample_host_location_id": [], "data_size": "0.940 MB", "sample_ph_range": { "min": 806.0, "max": 806.0 }, "sample_temperature_range": { "min": 79.0, "max": 79.0 }, "completeness": 100.0, "contamination": 8.8, "strain_heterogeneity": 66.67, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3253135", "Number of Sequences": "407", "Longest Sequences (bp)": "53405", "N50 (bp)": "12279", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "53.1", "Number of CDSs": "2739", "Average Protein Length": "313.5", "Coding Ratio (%)": "79.2", "Number of rRNAs": "2", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Zwartia hollandica", "strain": "strain=LF4-65", "accession": "GCA_019923725.1", "taxid": 324606, "species_taxid": 324606, "relation_to_type": "type", "validated": true, "ani": 83.3458, "matched_fragments": 580, "total_fragments": 867, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sheuella amnicola", "strain": "strain=NBD-18", "accession": "GCA_010499255.1", "taxid": 2707330, "species_taxid": 2707330, "relation_to_type": "type", "validated": true, "ani": 77.8989, "matched_fragments": 107, "total_fragments": 867, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jezberella montanilacus", "strain": "strain=MWH-P2sevCIIIb", "accession": "GCA_003003055.1", "taxid": 323426, "species_taxid": 323426, "relation_to_type": "type", "validated": true, "ani": 77.4369, "matched_fragments": 87, "total_fragments": 867, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter aestuarii", "strain": "strain=KS-M25", "accession": "GCA_009866805.1", "taxid": 2511204, "species_taxid": 2511204, "relation_to_type": "type", "validated": true, "ani": 76.9592, "matched_fragments": 60, "total_fragments": 867, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter spanius", "strain": "strain=LMG 5911", "accession": "GCA_902859605.1", "taxid": 217203, "species_taxid": 217203, "relation_to_type": "suspected-type", "validated": true, "ani": 76.8865, "matched_fragments": 60, "total_fragments": 867, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter spanius", "strain": "strain=DSM 23806", "accession": "GCA_002812705.1", "taxid": 217203, "species_taxid": 217203, "relation_to_type": "suspected-type", "validated": true, "ani": 76.8494, "matched_fragments": 60, "total_fragments": 867, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter deleyi", "strain": "strain=LMG 3458", "accession": "GCA_902859705.1", "taxid": 1353891, "species_taxid": 1353891, "relation_to_type": "type", "validated": true, "ani": 76.8046, "matched_fragments": 60, "total_fragments": 867, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter marplatensis", "strain": "strain=CECT 7342", "accession": "GCA_003315095.1", "taxid": 470868, "species_taxid": 470868, "relation_to_type": "type", "validated": true, "ani": 76.7236, "matched_fragments": 69, "total_fragments": 867, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter marplatensis", "strain": "strain=B2", "accession": "GCA_002209535.1", "taxid": 470868, "species_taxid": 470868, "relation_to_type": "type", "validated": true, "ani": 76.6003, "matched_fragments": 69, "total_fragments": 867, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella avium", "strain": "strain=ATCC 35086", "accession": "GCA_003581385.1", "taxid": 521, "species_taxid": 521, "relation_to_type": "type", "validated": true, "ani": 76.5368, "matched_fragments": 54, "total_fragments": 867, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella avium", "strain": "strain=HAMBI_2160", "accession": "GCA_003350095.1", "taxid": 521, "species_taxid": 521, "relation_to_type": "type", "validated": true, "ani": 76.5211, "matched_fragments": 53, "total_fragments": 867, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter animicus", "strain": "strain=LMG 26690", "accession": 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