{
    "type": "genome",
    "identifier": "GCA_903958425.1",
    "organism": "uncultured Gallionellaceae bacterium",
    "title": "uncultured Gallionellaceae bacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "BILS",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_903958425.1",
        "bioproject": "PRJEB38681",
        "biosample": "SAMEA6948035",
        "wgs_master": "CAJBTC000000000.1",
        "refseq_category": "na",
        "taxid": "499997",
        "species_taxid": "499997",
        "organism_name": "uncultured Gallionellaceae bacterium",
        "infraspecific_name": "",
        "isolate": "A-2_bin-155",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/07/19",
        "asm_name": "freshwater MAG --- A-2_bin-155",
        "submitter": "BILS",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/958/425/GCA_903958425.1_freshwater_MAG_---_A-2_bin-155",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-07-19",
    "dateModified": "2020-07-19",
    "datePublished": "2020-07-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Gallionellaceae bacterium"
        ],
        "sample_taxid": [
            "499997"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Canada"
        ],
        "sample_host_location_id": [],
        "data_size": "1.045 MB",
        "sample_ph_range": {
            "min": 579.0,
            "max": 579.0
        },
        "sample_temperature_range": {
            "min": 96.0,
            "max": 96.0
        },
        "completeness": 80.73,
        "contamination": 2.41,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3614838",
        "Number of Sequences": "660",
        "Longest Sequences (bp)": "38873",
        "N50 (bp)": "7320",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "46.7",
        "Number of CDSs": "2851",
        "Average Protein Length": "288.1",
        "Coding Ratio (%)": "68.2",
        "Number of rRNAs": "0",
        "Number of tRNAs": "44",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 80.73,
            "contamination": 2.41,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_903876625.1",
                "gtdb_species": "s__PALSA-1006 sp903876625",
                "ani": 99.5416,
                "matched_fragments": 707,
                "total_fragments": 839,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__PALSA-1006",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.53",
                "min_intra_species_ani": "99.53",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_903913145.1",
                "gtdb_species": "s__PALSA-1006 sp903913145",
                "ani": 80.3752,
                "matched_fragments": 322,
                "total_fragments": 839,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__PALSA-1006",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.24",
                "min_intra_species_ani": "99.24",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_003151655.1",
                "gtdb_species": "s__PALSA-1006 sp003151655",
                "ani": 78.4259,
                "matched_fragments": 192,
                "total_fragments": 839,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__PALSA-1006",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009773615.1",
                "gtdb_species": "s__PALSA-1006 sp009773615",
                "ani": 77.4378,
                "matched_fragments": 130,
                "total_fragments": 839,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__PALSA-1006",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004297065.1",
                "gtdb_species": "s__PALSA-1006 sp004297065",
                "ani": 77.3224,
                "matched_fragments": 127,
                "total_fragments": 839,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__PALSA-1006",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903847155.1",
                "gtdb_species": "s__Sideroxydans sp903847155",
                "ani": 77.0353,
                "matched_fragments": 90,
                "total_fragments": 839,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__Sideroxydans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013791855.1",
                "gtdb_species": "s__Sideroxydans sp013791855",
                "ani": 76.9116,
                "matched_fragments": 67,
                "total_fragments": 839,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__Sideroxydans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.90",
                "min_intra_species_ani": "99.88",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_016214695.1",
                "gtdb_species": "s__Sideroxydans sp016214695",
                "ani": 76.9112,
                "matched_fragments": 71,
                "total_fragments": 839,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__Sideroxydans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903873725.1",
                "gtdb_species": "s__CAITJF01 sp903873725",
                "ani": 76.8767,
                "matched_fragments": 84,
                "total_fragments": 839,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__CAITJF01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000025705.1",
                "gtdb_species": "s__Sideroxydans lithotrophicus",
                "ani": 76.8304,
                "matched_fragments": 85,
                "total_fragments": 839,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__Sideroxydans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018813765.1",
                "gtdb_species": "s__Sideroxydans sp018813765",
                "ani": 76.5875,
                "matched_fragments": 71,
                "total_fragments": 839,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__Sideroxydans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.93",
                "min_intra_species_ani": "99.86",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.5,
        "cell_length": 0.19,
        "doubling_h": null,
        "growth_tmp": 26.0,
        "optimum_tmp": 22.0,
        "optimum_ph": 7.75,
        "genome_size": 2953388.75,
        "gc_content": 56.116,
        "coding_genes": 3030.0,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 45.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Gallionellaceae",
        "g__PALSA-1006",
        "s__PALSA-1006 sp903876625"
    ],
    "_genome_taxon": [
        "uncultured",
        "Gallionellaceae",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Gallionellaceae",
        "g__PALSA-1006",
        "s__PALSA-1006 sp903876625",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Burkholderiales",
        "Gallionellaceae",
        "PALSA-1006",
        "PALSA-1006",
        "sp903876625"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000027",
            "label": "pond"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}