{
    "type": "genome",
    "identifier": "GCA_903960035.1",
    "organism": "uncultured beta proteobacterium",
    "title": "uncultured beta proteobacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "BILS",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_903960035.1",
        "bioproject": "PRJEB38681",
        "biosample": "SAMEA6950240",
        "wgs_master": "CAJBZH000000000.1",
        "refseq_category": "na",
        "taxid": "86027",
        "species_taxid": "86027",
        "organism_name": "uncultured beta proteobacterium",
        "infraspecific_name": "",
        "isolate": "Loc090116-9m_bin-0694",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/07/19",
        "asm_name": "freshwater MAG --- Loc090116-9m_bin-0694",
        "submitter": "BILS",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/960/035/GCA_903960035.1_freshwater_MAG_---_Loc090116-9m_bin-0694",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-07-19",
    "dateModified": "2020-07-19",
    "datePublished": "2020-07-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured beta proteobacterium"
        ],
        "sample_taxid": [
            "86027"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Switzerland"
        ],
        "sample_host_location_id": [],
        "data_size": "0.967 MB",
        "sample_ph_range": {
            "min": 764.0,
            "max": 764.0
        },
        "sample_temperature_range": {
            "min": 4.0,
            "max": 4.0
        },
        "completeness": 39.27,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3461381",
        "Number of Sequences": "1229",
        "Longest Sequences (bp)": "12429",
        "N50 (bp)": "2927",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "67.1",
        "Number of CDSs": "2143",
        "Average Protein Length": "285.5",
        "Coding Ratio (%)": "53.0",
        "Number of rRNAs": "0",
        "Number of tRNAs": "10",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Hydrogenophaga taeniospiralis",
                "strain": "strain=NBRC 102512",
                "accession": "GCA_001592305.1",
                "taxid": 65656,
                "species_taxid": 65656,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4651,
                "matched_fragments": 131,
                "total_fragments": 425,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ramlibacter rhizophilus",
                "strain": "strain=CCTCC AB2015357",
                "accession": "GCA_004681965.1",
                "taxid": 1781167,
                "species_taxid": 1781167,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.169,
                "matched_fragments": 121,
                "total_fragments": 425,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Variovorax boronicumulans",
                "strain": "strain=NBRC 103145",
                "accession": "GCA_001591345.1",
                "taxid": 436515,
                "species_taxid": 436515,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0376,
                "matched_fragments": 136,
                "total_fragments": 425,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ramlibacter pinisoli",
                "strain": "strain=MAH-25",
                "accession": "GCA_009758015.1",
                "taxid": 2682844,
                "species_taxid": 2682844,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0181,
                "matched_fragments": 149,
                "total_fragments": 425,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Variovorax paradoxus",
                "strain": "strain=NBRC 15149",
                "accession": "GCA_001591365.1",
                "taxid": 34073,
                "species_taxid": 34073,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.9746,
                "matched_fragments": 140,
                "total_fragments": 425,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodoferax lacus",
                "strain": "strain=IMCC26218",
                "accession": "GCA_003415675.1",
                "taxid": 2184758,
                "species_taxid": 2184758,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.937,
                "matched_fragments": 112,
                "total_fragments": 425,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudorhodoferax aquiterrae",
                "strain": "strain=KCTC 23314",
                "accession": "GCA_014652235.1",
                "taxid": 747304,
                "species_taxid": 747304,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9357,
                "matched_fragments": 158,
                "total_fragments": 425,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudorhodoferax soli",
                "strain": "strain=DSM 21634",
                "accession": "GCA_003337555.1",
                "taxid": 545864,
                "species_taxid": 545864,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8617,
                "matched_fragments": 158,
                "total_fragments": 425,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hydrogenophaga aromaticivorans",
                "strain": "strain=D2P1",
                "accession": "GCA_013387465.1",
                "taxid": 2610898,
                "species_taxid": 2610898,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8458,
                "matched_fragments": 143,
                "total_fragments": 425,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limnohabitans radicicola",
                "strain": "strain=JUR4",
                "accession": "GCA_014837235.1",
                "taxid": 2771427,
                "species_taxid": 2771427,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8164,
                "matched_fragments": 67,
                "total_fragments": 425,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax facilis",
                "strain": "strain=DSM 649",
                "accession": "GCA_023913775.1",
                "taxid": 12917,
                "species_taxid": 12917,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6295,
                "matched_fragments": 113,
                "total_fragments": 425,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ramlibacter humi",
                "strain": "strain=18x22-1",
                "accession": "GCA_004681975.1",
                "taxid": 2530451,
                "species_taxid": 2530451,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6253,
                "matched_fragments": 137,
                "total_fragments": 425,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Extensimonas vulgaris",
                "strain": "strain=DSM 100911",
                "accession": "GCA_003337425.1",
                "taxid": 1031594,
                "species_taxid": 1031594,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2988,
                "matched_fragments": 76,
                "total_fragments": 425,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Melaminivora jejuensis",
                "strain": "strain=KCTC 32230",
                "accession": "GCA_017811175.1",
                "taxid": 1267217,
                "species_taxid": 1267217,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1973,
                "matched_fragments": 105,
                "total_fragments": 425,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphaerotilus natans",
                "strain": "strain=ATCC 13338",
                "accession": "GCA_900156335.1",
                "taxid": 34103,
                "species_taxid": 34103,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9197,
                "matched_fragments": 122,
                "total_fragments": 425,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphaerotilus natans subsp. natans",
                "strain": "strain=DSM 6575",
                "accession": "GCA_000689195.1",
                "taxid": 882627,
                "species_taxid": 34103,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8203,
                "matched_fragments": 119,
                "total_fragments": 425,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 39.27,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_016790475.1",
                "gtdb_species": "s__CAISIP01 sp016790475",
                "ani": 81.362,
                "matched_fragments": 237,
                "total_fragments": 425,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__CAISIP01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018063505.1",
                "gtdb_species": "s__CAISIP01 sp018063505",
                "ani": 78.7896,
                "matched_fragments": 173,
                "total_fragments": 425,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__CAISIP01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.51",
                "min_intra_species_ani": "99.51",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_005503335.1",
                "gtdb_species": "s__SCMQ01 sp005503335",
                "ani": 78.547,
                "matched_fragments": 160,
                "total_fragments": 425,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__SCMQ01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_002842205.1",
                "gtdb_species": "s__PHCI01 sp002842205",
                "ani": 78.4741,
                "matched_fragments": 124,
                "total_fragments": 425,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__PHCI01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001592305.1",
                "gtdb_species": "s__Hydrogenophaga taeniospiralis",
                "ani": 78.4651,
                "matched_fragments": 131,
                "total_fragments": 425,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hydrogenophaga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003599455.1",
                "gtdb_species": "s__Hydrogenophaga sp003599455",
                "ani": 78.3698,
                "matched_fragments": 148,
                "total_fragments": 425,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hydrogenophaga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001770905.1",
                "gtdb_species": "s__Hydrogenophaga sp001770905",
                "ani": 78.2268,
                "matched_fragments": 133,
                "total_fragments": 425,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hydrogenophaga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.83",
                "min_intra_species_ani": "99.75",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_014879655.1",
                "gtdb_species": "s__JAABQG01 sp014879655",
                "ani": 78.1276,
                "matched_fragments": 97,
                "total_fragments": 425,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__JAABQG01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013693755.1",
                "gtdb_species": "s__Tibeticola sp013693755",
                "ani": 77.8947,
                "matched_fragments": 112,
                "total_fragments": 425,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Tibeticola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.98",
                "min_intra_species_ani": "96.98",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002754375.1",
                "gtdb_species": "s__Variovorax sp002754375",
                "ani": 77.8507,
                "matched_fragments": 139,
                "total_fragments": 425,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Variovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.39",
                "min_intra_species_ani": "95.37",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000184745.1",
                "gtdb_species": "s__Variovorax paradoxus_C",
                "ani": 77.7641,
                "matched_fragments": 134,
                "total_fragments": 425,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Variovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001592265.1",
                "gtdb_species": "s__Hylemonella delicata",
                "ani": 77.7553,
                "matched_fragments": 112,
                "total_fragments": 425,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hylemonella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016703945.1",
                "gtdb_species": "s__Rhodoferax sp016703945",
                "ani": 77.7317,
                "matched_fragments": 81,
                "total_fragments": 425,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Rhodoferax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004216615.1",
                "gtdb_species": "s__Variovorax sp004216615",
                "ani": 77.6263,
                "matched_fragments": 140,
                "total_fragments": 425,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Variovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019218755.1",
                "gtdb_species": "s__Acidovorax sp019218755",
                "ani": 77.5481,
                "matched_fragments": 142,
                "total_fragments": 425,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.86",
                "min_intra_species_ani": "98.86",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_014859475.1",
                "gtdb_species": "s__Rhodoferax sp014859475",
                "ani": 77.4254,
                "matched_fragments": 69,
                "total_fragments": 425,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Rhodoferax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903945325.1",
                "gtdb_species": "s__Rhodoferax sp903945325",
                "ani": 77.3901,
                "matched_fragments": 68,
                "total_fragments": 425,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Rhodoferax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.68",
                "min_intra_species_ani": "99.56",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_017798165.1",
                "gtdb_species": "s__Rhodoferax sp017798165",
                "ani": 76.8233,
                "matched_fragments": 92,
                "total_fragments": 425,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Rhodoferax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016790635.1",
                "gtdb_species": "s__JAEUOS01 sp016790635",
                "ani": 76.1623,
                "matched_fragments": 74,
                "total_fragments": 425,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__JAEUOS01;g__JAEUOS01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Burkholderiaceae",
        "g__CAISIP01",
        "s__"
    ],
    "_genome_taxon": [
        "uncultured",
        "beta",
        "proteobacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Burkholderiaceae",
        "g__CAISIP01",
        "s__",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Burkholderiales",
        "Burkholderiaceae",
        "CAISIP01",
        "s",
        "",
        ""
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}