{ "type": "genome", "identifier": "GCA_903960045.1", "organism": "uncultured Actinomycetes bacterium", "title": "uncultured Actinomycetes bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903960045.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6943768", "wgs_master": "CAJBZJ000000000.1", "refseq_category": "na", "taxid": "152507", "species_taxid": "152507", "organism_name": "uncultured Actinomycetes bacterium", "infraspecific_name": "", "isolate": "Loc090907-4m_bin-114", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/18", "asm_name": "freshwater MAG --- Loc090907-4m_bin-114", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/960/045/GCA_903960045.1_freshwater_MAG_---_Loc090907-4m_bin-114", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-18", "dateModified": "2020-07-18", "datePublished": "2020-07-18", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Actinomycetes bacterium" ], "sample_taxid": [ "152507" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Switzerland" ], "sample_host_location_id": [], "data_size": "0.763 MB", "sample_ph_range": { "min": 79.0, "max": 79.0 }, "sample_temperature_range": { "min": 195.0, "max": 195.0 }, "completeness": 91.67, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2840039", "Number of Sequences": "551", "Longest Sequences (bp)": "28914", "N50 (bp)": "6679", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.2", "Number of CDSs": "2166", "Average Protein Length": "313.9", "Coding Ratio (%)": "71.8", "Number of rRNAs": "0", "Number of tRNAs": "43", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinomarinicola tropica", "strain": "strain=SCSIO 58843", "accession": "GCA_009650215.1", "taxid": 2789776, "species_taxid": 2789776, "relation_to_type": "type", "validated": true, "ani": 77.6667, "matched_fragments": 217, "total_fragments": 645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhabdothermincola salaria", "strain": "strain=EGI L10124", "accession": "GCA_021246445.1", "taxid": 2903142, "species_taxid": 2903142, "relation_to_type": "type", "validated": true, "ani": 77.5566, "matched_fragments": 228, "total_fragments": 645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ilumatobacter fluminis", "strain": "strain=DSM 18936", "accession": "GCA_004364865.1", "taxid": 467091, "species_taxid": 467091, "relation_to_type": "type", "validated": true, "ani": 77.1085, "matched_fragments": 146, "total_fragments": 645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhabdothermincola sediminis", "strain": "strain=SYSU G02662", "accession": "GCA_014805525.1", "taxid": 2751370, "species_taxid": 2751370, "relation_to_type": "type", "validated": true, "ani": 77.0114, "matched_fragments": 167, "total_fragments": 645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desertimonas flava", "strain": "strain=SYSU D60003", "accession": "GCA_003426815.1", "taxid": 2064846, "species_taxid": 2064846, "relation_to_type": "type", "validated": true, "ani": 76.4204, "matched_fragments": 188, "total_fragments": 645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ilumatobacter coccineus", "strain": "strain=YM16-304", "accession": "GCA_000348785.1", "taxid": 467094, "species_taxid": 467094, "relation_to_type": "type", "validated": true, "ani": 76.3857, "matched_fragments": 126, "total_fragments": 645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedococcus dokdonensis", "strain": "strain=DSM 22329", "accession": "GCA_900104525.1", "taxid": 443156, "species_taxid": 443156, "relation_to_type": "type", "validated": true, "ani": 75.9617, "matched_fragments": 86, "total_fragments": 645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes teichomyceticus", "strain": "strain=ATCC 31121", "accession": "GCA_003711105.1", "taxid": 1867, "species_taxid": 1867, "relation_to_type": "type", "validated": true, "ani": 75.4852, "matched_fragments": 139, "total_fragments": 645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Modestobacter marinus", "strain": "strain=DSM 45201", "accession": "GCA_011758655.1", "taxid": 477641, "species_taxid": 477641, "relation_to_type": "type", "validated": true, "ani": 75.4673, "matched_fragments": 127, "total_fragments": 645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Modestobacter caceresii", "strain": "strain=KNN 45-2b", "accession": "GCA_000761485.1", "taxid": 1522368, "species_taxid": 1522368, "relation_to_type": "type", "validated": true, "ani": 75.4567, "matched_fragments": 109, "total_fragments": 645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Asanoa hainanensis", "strain": "strain=CGMCC 4.5593", "accession": "GCA_900188485.1", "taxid": 560556, "species_taxid": 560556, "relation_to_type": "type", "validated": true, "ani": 75.4542, "matched_fragments": 152, "total_fragments": 645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Catellatospora methionotrophica", "strain": "strain=NBRC 14553", "accession": "GCA_016862655.1", "taxid": 121620, "species_taxid": 121620, "relation_to_type": "type", "validated": true, "ani": 75.407, "matched_fragments": 143, "total_fragments": 645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Catellatospora methionotrophica", "strain": "strain=IMSNU 22006", "accession": "GCA_011297335.1", "taxid": 121620, "species_taxid": 121620, "relation_to_type": "type", "validated": true, "ani": 75.4051, "matched_fragments": 148, "total_fragments": 645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Modestobacter versicolor", "strain": "strain=CP153-2", "accession": "GCA_003226595.1", "taxid": 429133, "species_taxid": 429133, "relation_to_type": "type", "validated": true, "ani": 75.395, "matched_fragments": 125, "total_fragments": 645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes ferrugineus", "strain": "strain=NBRC 15555", "accession": "GCA_016862195.1", "taxid": 113564, "species_taxid": 113564, "relation_to_type": "type", "validated": true, "ani": 75.3919, "matched_fragments": 150, "total_fragments": 645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes flavus", "strain": "strain=NEAU-H7", "accession": "GCA_017592555.1", "taxid": 2820290, "species_taxid": 2820290, "relation_to_type": "type", "validated": true, "ani": 75.383, "matched_fragments": 145, "total_fragments": 645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes lichenicola", "strain": "strain=LDG1-01", "accession": "GCA_016785085.1", "taxid": 2802976, "species_taxid": 2802976, "relation_to_type": "type", "validated": true, "ani": 75.3123, "matched_fragments": 170, "total_fragments": 645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Modestobacter versicolor", "strain": "strain=DSM 16678", "accession": "GCA_014195485.1", "taxid": 429133, "species_taxid": 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