{ "type": "genome", "identifier": "GCA_903960335.1", "organism": "uncultured Actinomycetes bacterium", "title": "uncultured Actinomycetes bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903960335.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6945526", "wgs_master": "CAJCAH000000000.1", "refseq_category": "na", "taxid": "152507", "species_taxid": "152507", "organism_name": "uncultured Actinomycetes bacterium", "infraspecific_name": "", "isolate": "Loc080925-7m_bin-0077", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/18", "asm_name": "freshwater MAG --- Loc080925-7m_bin-0077", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/960/335/GCA_903960335.1_freshwater_MAG_---_Loc080925-7m_bin-0077", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-18", "dateModified": "2020-07-18", "datePublished": "2020-07-18", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Actinomycetes bacterium" ], "sample_taxid": [ "152507" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Switzerland" ], "sample_host_location_id": [], "data_size": "0.688 MB", "sample_ph_range": { "min": 739.0, "max": 739.0 }, "sample_temperature_range": { "min": 135.0, "max": 135.0 }, "completeness": 80.21, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2552856", "Number of Sequences": "635", "Longest Sequences (bp)": "17915", "N50 (bp)": "4910", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.3", "Number of CDSs": "1849", "Average Protein Length": "302.2", "Coding Ratio (%)": "65.7", "Number of rRNAs": "0", "Number of tRNAs": "39", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhabdothermincola salaria", "strain": "strain=EGI L10124", "accession": "GCA_021246445.1", "taxid": 2903142, "species_taxid": 2903142, "relation_to_type": "type", "validated": true, "ani": 77.4879, "matched_fragments": 167, "total_fragments": 495, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomarinicola tropica", "strain": "strain=SCSIO 58843", "accession": "GCA_009650215.1", "taxid": 2789776, "species_taxid": 2789776, "relation_to_type": "type", "validated": true, "ani": 77.3382, "matched_fragments": 166, "total_fragments": 495, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhabdothermincola sediminis", "strain": "strain=SYSU G02662", "accession": "GCA_014805525.1", "taxid": 2751370, "species_taxid": 2751370, "relation_to_type": "type", "validated": true, "ani": 77.1336, "matched_fragments": 125, "total_fragments": 495, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ilumatobacter fluminis", "strain": "strain=DSM 18936", "accession": "GCA_004364865.1", "taxid": 467091, "species_taxid": 467091, "relation_to_type": "type", "validated": true, "ani": 76.9084, "matched_fragments": 113, "total_fragments": 495, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desertimonas flava", "strain": "strain=SYSU D60003", "accession": "GCA_003426815.1", "taxid": 2064846, "species_taxid": 2064846, "relation_to_type": "type", "validated": true, "ani": 76.4713, "matched_fragments": 139, "total_fragments": 495, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janibacter melonis", "strain": "strain=NBRC107855", "accession": "GCA_020567375.1", "taxid": 262209, "species_taxid": 262209, "relation_to_type": "type", "validated": true, "ani": 75.5392, "matched_fragments": 88, "total_fragments": 495, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Modestobacter marinus", "strain": "strain=DSM 45201", "accession": "GCA_011758655.1", "taxid": 477641, "species_taxid": 477641, "relation_to_type": "type", "validated": true, "ani": 75.4183, "matched_fragments": 103, "total_fragments": 495, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbiconiux flava", "strain": "strain=DSM 26474", "accession": "GCA_013409865.1", "taxid": 881268, "species_taxid": 881268, "relation_to_type": "type", "validated": true, "ani": 75.3647, "matched_fragments": 78, "total_fragments": 495, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Modestobacter versicolor", "strain": "strain=CP153-2", "accession": "GCA_003226595.1", "taxid": 429133, "species_taxid": 429133, "relation_to_type": "type", "validated": true, "ani": 75.3564, "matched_fragments": 103, "total_fragments": 495, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Modestobacter caceresii", "strain": "strain=KNN 45-2b", "accession": "GCA_000761485.1", "taxid": 1522368, "species_taxid": 1522368, "relation_to_type": "type", "validated": true, "ani": 75.348, "matched_fragments": 95, "total_fragments": 495, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Modestobacter versicolor", "strain": "strain=DSM 16678", "accession": "GCA_014195485.1", "taxid": 429133, "species_taxid": 429133, "relation_to_type": "type", "validated": true, "ani": 75.3334, "matched_fragments": 118, "total_fragments": 495, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allostreptomyces psammosilenae", "strain": "strain=DSM 42178", "accession": "GCA_013407765.1", "taxid": 1892865, "species_taxid": 1892865, "relation_to_type": "type", "validated": true, "ani": 75.3266, "matched_fragments": 97, "total_fragments": 495, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces alkaliterrae", "strain": "strain=OF1", "accession": "GCA_007097205.2", "taxid": 2213162, "species_taxid": 2213162, "relation_to_type": "type", "validated": true, "ani": 75.284, "matched_fragments": 85, "total_fragments": 495, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes lichenicola", "strain": "strain=LDG1-01", "accession": "GCA_016785085.1", "taxid": 2802976, "species_taxid": 2802976, "relation_to_type": "type", "validated": true, "ani": 75.1878, "matched_fragments": 122, "total_fragments": 495, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes ferrugineus", "strain": "strain=NBRC 15555", "accession": 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