{ "type": "genome", "identifier": "GCA_903960445.1", "organism": "uncultured Rhodospirillales bacterium", "title": "uncultured Rhodospirillales bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903960445.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6949085", "wgs_master": "CAJCAT000000000.1", "refseq_category": "na", "taxid": "296830", "species_taxid": "296830", "organism_name": "uncultured Rhodospirillales bacterium", "infraspecific_name": "", "isolate": "Loc080925-5m_bin-0754", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/18", "asm_name": "freshwater MAG --- Loc080925-5m_bin-0754", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/960/445/GCA_903960445.1_freshwater_MAG_---_Loc080925-5m_bin-0754", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-18", "dateModified": "2020-07-18", "datePublished": "2020-07-18", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Rhodospirillales bacterium" ], "sample_taxid": [ "296830" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Switzerland" ], "sample_host_location_id": [], "data_size": "0.718 MB", "sample_ph_range": { "min": 794.0, "max": 794.0 }, "sample_temperature_range": { "min": 148.0, "max": 148.0 }, "completeness": 75.1, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2561143", "Number of Sequences": "844", "Longest Sequences (bp)": "19818", "N50 (bp)": "3222", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.7", "Number of CDSs": "1791", "Average Protein Length": "279.3", "Coding Ratio (%)": "58.6", "Number of rRNAs": "0", "Number of tRNAs": "22", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseomonas alkaliterrae", "strain": "strain=DSM 25895", "accession": "GCA_014199195.1", "taxid": 1452450, "species_taxid": 1452450, "relation_to_type": "type", "validated": true, "ani": 77.1113, "matched_fragments": 100, "total_fragments": 369, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas lacus", "strain": "strain=CGMCC 1.3617", "accession": "GCA_014644535.1", "taxid": 287609, "species_taxid": 287609, "relation_to_type": "type", "validated": true, "ani": 76.9289, "matched_fragments": 106, "total_fragments": 369, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas rubea", "strain": "strain=MO17", "accession": "GCA_016106015.1", "taxid": 2748666, "species_taxid": 2748666, "relation_to_type": "type", "validated": true, "ani": 76.9254, "matched_fragments": 107, "total_fragments": 369, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas oryzicola", "strain": "strain=KCTC 22478", "accession": "GCA_012163135.1", "taxid": 535904, "species_taxid": 535904, "relation_to_type": "type", "validated": true, "ani": 76.7293, "matched_fragments": 89, "total_fragments": 369, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas coralli", "strain": "strain=M0104", "accession": "GCA_009829925.1", "taxid": 2545983, "species_taxid": 2545983, "relation_to_type": "type", "validated": true, "ani": 76.6807, "matched_fragments": 51, "total_fragments": 369, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas oryzae", "strain": "strain=KCTC 42542", "accession": "GCA_008386565.1", "taxid": 1608942, "species_taxid": 1608942, "relation_to_type": "type", "validated": true, "ani": 76.5175, "matched_fragments": 63, "total_fragments": 369, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas hellenica", "strain": "strain=LMG 31523", "accession": "GCA_018129085.1", "taxid": 2687306, "species_taxid": 2687306, "relation_to_type": "type", "validated": true, "ani": 76.4467, "matched_fragments": 95, "total_fragments": 369, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas ludipueritiae", "strain": "strain=DSM 14915", "accession": "GCA_014490445.1", "taxid": 198093, "species_taxid": 198093, "relation_to_type": "type", "validated": true, "ani": 76.3827, "matched_fragments": 68, "total_fragments": 369, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas wenyumeiae", "strain": "strain=Z23", "accession": "GCA_003696345.1", "taxid": 2478470, "species_taxid": 2478470, "relation_to_type": "type", "validated": true, "ani": 76.3339, "matched_fragments": 70, "total_fragments": 369, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Falsiroseomonas selenitidurans", "strain": "strain=BU-1", "accession": "GCA_012103215.1", "taxid": 2716335, "species_taxid": 2716335, "relation_to_type": "type", "validated": true, "ani": 76.309, "matched_fragments": 101, "total_fragments": 369, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas harenae", "strain": "strain=CPCC 101081", "accession": "GCA_009848505.1", "taxid": 2692566, "species_taxid": 2692566, "relation_to_type": "type", "validated": true, "ani": 76.1879, "matched_fragments": 55, "total_fragments": 369, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas gilardii subsp. rosea", "strain": "strain=NCTC13290", "accession": "GCA_900455865.1", "taxid": 243956, "species_taxid": 257708, "relation_to_type": "type", "validated": true, "ani": 76.0534, "matched_fragments": 52, "total_fragments": 369, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas rosea", "strain": "strain=DSM 14916", "accession": "GCA_900141905.1", "taxid": 198092, "species_taxid": 198092, "relation_to_type": "type", "validated": true, "ani": 76.0202, "matched_fragments": 56, "total_fragments": 369, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas vastitatis", "strain": "strain=CPCC 101021", "accession": "GCA_003604215.1", "taxid": 2307076, "species_taxid": 2307076, "relation_to_type": "type", "validated": true, "ani": 76.0047, "matched_fragments": 64, "total_fragments": 369, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas gilardii subsp. rosea", "strain": "strain=ATCC BAA-691", "accession": "GCA_000518625.1", "taxid": 243956, 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"Alphaproteobacteria", "Acetobacterales", "Acetobacteraceae", "Neoroseomonas", "Neoroseomonas", "sp903844785" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }