{
    "type": "genome",
    "identifier": "GCA_903960455.1",
    "organism": "uncultured Chthonomonas sp.",
    "title": "uncultured Chthonomonas sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "BILS",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_903960455.1",
        "bioproject": "PRJEB38681",
        "biosample": "SAMEA6944051",
        "wgs_master": "CAJCAS000000000.1",
        "refseq_category": "na",
        "taxid": "1642931",
        "species_taxid": "1642931",
        "organism_name": "uncultured Chthonomonas sp.",
        "infraspecific_name": "",
        "isolate": "Loc080925-5-5m_bin-0956",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/07/20",
        "asm_name": "freshwater MAG --- Loc080925-5-5m_bin-0956",
        "submitter": "BILS",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/960/455/GCA_903960455.1_freshwater_MAG_---_Loc080925-5-5m_bin-0956",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-07-20",
    "dateModified": "2020-07-20",
    "datePublished": "2020-07-20",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Chthonomonas sp."
        ],
        "sample_taxid": [
            "1642931"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Switzerland"
        ],
        "sample_host_location_id": [],
        "data_size": "1.494 MB",
        "sample_ph_range": {
            "min": 754.0,
            "max": 754.0
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 68.57,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "5370137",
        "Number of Sequences": "1195",
        "Longest Sequences (bp)": "29176",
        "N50 (bp)": "5527",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "68.3",
        "Number of CDSs": "3010",
        "Average Protein Length": "356.8",
        "Coding Ratio (%)": "60.0",
        "Number of rRNAs": "0",
        "Number of tRNAs": "35",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Archangium gephyra",
                "strain": "strain=DSM 2261",
                "accession": "GCA_003387095.1",
                "taxid": 48,
                "species_taxid": 48,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.835,
                "matched_fragments": 84,
                "total_fragments": 1145,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Archangium gephyra",
                "strain": "strain=DSM 2261",
                "accession": "GCA_001027285.1",
                "taxid": 48,
                "species_taxid": 48,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8306,
                "matched_fragments": 85,
                "total_fragments": 1145,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kitasatospora gansuensis",
                "strain": "strain=DSM 44786",
                "accession": "GCA_014203705.1",
                "taxid": 258050,
                "species_taxid": 258050,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7928,
                "matched_fragments": 79,
                "total_fragments": 1145,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces albus subsp. albus",
                "strain": "strain=NRRL B-1811",
                "accession": "GCA_000725885.1",
                "taxid": 67257,
                "species_taxid": 1888,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 74.7556,
                "matched_fragments": 79,
                "total_fragments": 1145,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces albus",
                "strain": "strain=NBRC 13014",
                "accession": "GCA_000813365.1",
                "taxid": 1888,
                "species_taxid": 1888,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 74.751,
                "matched_fragments": 80,
                "total_fragments": 1145,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas denitrificans",
                "strain": "strain=DSM 18045",
                "accession": "GCA_003056305.1",
                "taxid": 370769,
                "species_taxid": 370769,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.6904,
                "matched_fragments": 56,
                "total_fragments": 1145,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Frankia irregularis",
                "strain": "strain=DSM 45899",
                "accession": "GCA_001536285.1",
                "taxid": 795642,
                "species_taxid": 795642,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.6728,
                "matched_fragments": 73,
                "total_fragments": 1145,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 68.57,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_903951425.1",
                "gtdb_species": "s__CAJBBX01 sp903951425",
                "ani": 99.8216,
                "matched_fragments": 1117,
                "total_fragments": 1145,
                "gtdb_taxonomy": "d__Bacteria;p__Armatimonadota;c__Chthonomonadetes;o__Chthonomonadales;f__CAJBBX01;g__CAJBBX01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.93",
                "min_intra_species_ani": "99.86",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 8,
                "status": "conclusive"
            },
            {
                "accession": "GCA_903885605.1",
                "gtdb_species": "s__CAJBBX01 sp903885605",
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                "matched_fragments": 958,
                "total_fragments": 1145,
                "gtdb_taxonomy": "d__Bacteria;p__Armatimonadota;c__Chthonomonadetes;o__Chthonomonadales;f__CAJBBX01;g__CAJBBX01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.86",
                "min_intra_species_ani": "99.85",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_012517255.1",
                "gtdb_species": "s__JAAYVH01 sp012517255",
                "ani": 76.3757,
                "matched_fragments": 108,
                "total_fragments": 1145,
                "gtdb_taxonomy": "d__Bacteria;p__Armatimonadota;c__Chthonomonadetes;o__Chthonomonadales;f__CAJBBX01;g__JAAYVH01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_012512505.1",
                "gtdb_species": "s__JAAZEB01 sp012512505",
                "ani": 75.5526,
                "matched_fragments": 74,
                "total_fragments": 1145,
                "gtdb_taxonomy": "d__Bacteria;p__Armatimonadota;c__SYMT01;o__JAAZEB01;f__JAAZEB01;g__JAAZEB01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002779825.1",
                "gtdb_species": "s__CG2-30-66-41 sp002779825",
                "ani": 75.1553,
                "matched_fragments": 58,
                "total_fragments": 1145,
                "gtdb_taxonomy": "d__Bacteria;p__Armatimonadota;c__Abditibacteria;o__CG2-30-66-41;f__CG2-30-66-41;g__CG2-30-66-41",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.77",
                "min_intra_species_ani": "99.73",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_006335115.1",
                "gtdb_species": "s__Quadrisphaera sp006335115",
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                "matched_fragments": 72,
                "total_fragments": 1145,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Quadrisphaeraceae;g__Quadrisphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014270065.1",
                "gtdb_species": "s__Quadrisphaera sp014270065",
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                "matched_fragments": 68,
                "total_fragments": 1145,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Quadrisphaeraceae;g__Quadrisphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 60.0,
        "optimum_tmp": 61.5,
        "optimum_ph": 4.3,
        "genome_size": 3437861.0,
        "gc_content": 54.6,
        "coding_genes": 2811.0,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 0.0,
        "thermophilic_range_tmp": 1.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Armatimonadota",
        "c__Chthonomonadetes",
        "o__Chthonomonadales",
        "f__CAJBBX01",
        "g__CAJBBX01",
        "s__CAJBBX01 sp903951425"
    ],
    "_genome_taxon": [
        "uncultured",
        "Chthonomonas",
        "sp.",
        "d__Bacteria",
        "p__Armatimonadota",
        "c__Chthonomonadetes",
        "o__Chthonomonadales",
        "f__CAJBBX01",
        "g__CAJBBX01",
        "s__CAJBBX01 sp903951425",
        "Bacteria",
        "Armatimonadota",
        "Chthonomonadetes",
        "Chthonomonadales",
        "CAJBBX01",
        "CAJBBX01",
        "CAJBBX01",
        "sp903951425"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}