{
    "type": "genome",
    "identifier": "GCA_903960615.1",
    "organism": "uncultured Opitutae bacterium",
    "title": "uncultured Opitutae bacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "BILS",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_903960615.1",
        "bioproject": "PRJEB38681",
        "biosample": "SAMEA6949788",
        "wgs_master": "CAJCBQ000000000.1",
        "refseq_category": "na",
        "taxid": "575426",
        "species_taxid": "575426",
        "organism_name": "uncultured Opitutae bacterium",
        "infraspecific_name": "",
        "isolate": "Loc081215-4m_bin-1942",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/07/19",
        "asm_name": "freshwater MAG --- Loc081215-4m_bin-1942",
        "submitter": "BILS",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/960/615/GCA_903960615.1_freshwater_MAG_---_Loc081215-4m_bin-1942",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-07-19",
    "dateModified": "2020-07-19",
    "datePublished": "2020-07-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Opitutae bacterium"
        ],
        "sample_taxid": [
            "575426"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Switzerland"
        ],
        "sample_host_location_id": [],
        "data_size": "0.902 MB",
        "sample_ph_range": {
            "min": 78.0,
            "max": 78.0
        },
        "sample_temperature_range": {
            "min": 44.0,
            "max": 44.0
        },
        "completeness": 95.37,
        "contamination": 1.77,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3197170",
        "Number of Sequences": "629",
        "Longest Sequences (bp)": "29590",
        "N50 (bp)": "6830",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "61.2",
        "Number of CDSs": "2093",
        "Average Protein Length": "338.7",
        "Coding Ratio (%)": "66.5",
        "Number of rRNAs": "0",
        "Number of tRNAs": "43",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Nibricoccus aquaticus",
                "strain": "strain=HZ-65",
                "accession": "GCA_002310495.1",
                "taxid": 2576891,
                "species_taxid": 2576891,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 196,
                "total_fragments": 726,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rariglobus hedericola",
                "strain": "strain=53C-WASEF",
                "accession": "GCA_007559335.1",
                "taxid": 2597822,
                "species_taxid": 2597822,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2276,
                "matched_fragments": 151,
                "total_fragments": 726,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Geminisphaera colitermitum",
                "strain": "strain=TAV2",
                "accession": "GCA_000171235.2",
                "taxid": 1148786,
                "species_taxid": 1148786,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6108,
                "matched_fragments": 129,
                "total_fragments": 726,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ereboglobus luteus",
                "strain": "strain=Ho45",
                "accession": "GCA_003096195.1",
                "taxid": 1796921,
                "species_taxid": 1796921,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3549,
                "matched_fragments": 121,
                "total_fragments": 726,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cephaloticoccus primus",
                "strain": "strain=CAG34",
                "accession": "GCA_001580015.1",
                "taxid": 1548207,
                "species_taxid": 1548207,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0554,
                "matched_fragments": 92,
                "total_fragments": 726,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Opitutus terrae",
                "strain": "strain=PB90-1",
                "accession": "GCA_000019965.1",
                "taxid": 107709,
                "species_taxid": 107709,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0198,
                "matched_fragments": 141,
                "total_fragments": 726,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 1.77,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
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                "accession": "GCA_903938935.1",
                "gtdb_species": "s__Tous-C4FEB sp903938935",
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                "matched_fragments": 576,
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                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Tous-C4FEB",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.58",
                "min_intra_species_ani": "98.56",
                "mean_intra_species_af": "0.78",
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                "num_clustered_genomes": 6,
                "status": "conclusive"
            },
            {
                "accession": "GCA_009919985.1",
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                "matched_fragments": 498,
                "total_fragments": 726,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Tous-C4FEB",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014376585.1",
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                "matched_fragments": 427,
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                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Tous-C4FEB",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002304445.1",
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                "matched_fragments": 407,
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                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Tous-C4FEB",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.22",
                "min_intra_species_ani": "97.15",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_002737275.1",
                "gtdb_species": "s__Tous-C4FEB sp002737275",
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                "matched_fragments": 297,
                "total_fragments": 726,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Tous-C4FEB",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903948415.1",
                "gtdb_species": "s__CAITWF01 sp903948415",
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                "matched_fragments": 312,
                "total_fragments": 726,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__CAITWF01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903839035.1",
                "gtdb_species": "s__Opi-474 sp903839035",
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                "matched_fragments": 191,
                "total_fragments": 726,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Opi-474",
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                "mean_intra_species_ani": "99.67",
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                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_002288455.1",
                "gtdb_species": "s__ER46 sp002288455",
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                "matched_fragments": 224,
                "total_fragments": 726,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__ER46",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_903876795.1",
                "gtdb_species": "s__Rariglobus sp903876795",
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                "matched_fragments": 136,
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                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Rariglobus",
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                "mean_intra_species_ani": "N/A",
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                "accession": "GCA_009695305.1",
                "gtdb_species": "s__CAITWF01 sp009695305",
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                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__CAITWF01",
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            },
            {
                "accession": "GCA_903919985.1",
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            },
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                "accession": "GCA_016235555.1",
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            },
            {
                "accession": "GCA_903820035.1",
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                "ani": 77.2699,
                "matched_fragments": 180,
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                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__ER46",
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            },
            {
                "accession": "GCA_002070825.1",
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
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        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
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        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
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        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
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        "p__Verrucomicrobiota",
        "c__Verrucomicrobiae",
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        "f__Opitutaceae",
        "g__Tous-C4FEB",
        "s__Tous-C4FEB sp903938935"
    ],
    "_genome_taxon": [
        "uncultured",
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        "bacterium",
        "d__Bacteria",
        "p__Verrucomicrobiota",
        "c__Verrucomicrobiae",
        "o__Opitutales",
        "f__Opitutaceae",
        "g__Tous-C4FEB",
        "s__Tous-C4FEB sp903938935",
        "Bacteria",
        "Verrucomicrobiota",
        "Verrucomicrobiae",
        "Opitutales",
        "Opitutaceae",
        "Tous-C4FEB",
        "Tous-C4FEB",
        "sp903938935"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}