{ "type": "genome", "identifier": "GCA_903960745.1", "organism": "uncultured Burkholderiales bacterium", "title": "uncultured Burkholderiales bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903960745.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6947663", "wgs_master": "CAJCBX000000000.1", "refseq_category": "na", "taxid": "208544", "species_taxid": "208544", "organism_name": "uncultured Burkholderiales bacterium", "infraspecific_name": "", "isolate": "Loc081215-9m_bin-0098", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/17", "asm_name": "freshwater MAG --- Loc081215-9m_bin-0098", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/960/745/GCA_903960745.1_freshwater_MAG_---_Loc081215-9m_bin-0098", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-17", "dateModified": "2020-07-17", "datePublished": "2020-07-17", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Burkholderiales bacterium" ], "sample_taxid": [ "208544" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Switzerland" ], "sample_host_location_id": [], "data_size": "0.386 MB", "sample_ph_range": { "min": 772.0, "max": 772.0 }, "sample_temperature_range": { "min": 48.0, "max": 48.0 }, "completeness": 49.71, "contamination": 1.14, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1355075", "Number of Sequences": "505", "Longest Sequences (bp)": "22432", "N50 (bp)": "2761", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.2", "Number of CDSs": "912", "Average Protein Length": "258.0", "Coding Ratio (%)": "52.1", "Number of rRNAs": "0", "Number of tRNAs": "6", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Polaromonas naphthalenivorans", "strain": "strain=CJ2", "accession": "GCA_000015505.1", "taxid": 216465, "species_taxid": 216465, "relation_to_type": "type", "validated": true, "ani": 79.3391, "matched_fragments": 72, "total_fragments": 154, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaromonas eurypsychrophila", "strain": "strain=CGMCC 1.15322", "accession": "GCA_014641715.1", "taxid": 1614635, "species_taxid": 1614635, "relation_to_type": "type", "validated": true, "ani": 79.0408, "matched_fragments": 73, "total_fragments": 154, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Curvibacter lanceolatus", "strain": "strain=ATCC 14669", "accession": "GCA_000381265.1", "taxid": 86182, "species_taxid": 86182, "relation_to_type": "type", "validated": true, "ani": 78.5908, "matched_fragments": 65, "total_fragments": 154, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limnohabitans radicicola", "strain": "strain=JUR4", "accession": "GCA_014837235.1", "taxid": 2771427, "species_taxid": 2771427, "relation_to_type": "type", "validated": true, "ani": 78.3432, "matched_fragments": 58, "total_fragments": 154, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga crocea", "strain": "strain=BA0156", "accession": "GCA_011388215.1", "taxid": 2716225, "species_taxid": 2716225, "relation_to_type": "type", "validated": true, "ani": 78.3298, "matched_fragments": 58, "total_fragments": 154, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Curvibacter gracilis", "strain": "strain=ATCC BAA-807", "accession": "GCA_000518645.1", "taxid": 230310, "species_taxid": 230310, "relation_to_type": "type", "validated": true, "ani": 78.2857, "matched_fragments": 70, "total_fragments": 154, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax lacus", "strain": "strain=IMCC26218", "accession": "GCA_003415675.1", "taxid": 2184758, "species_taxid": 2184758, "relation_to_type": "type", "validated": true, "ani": 78.2267, "matched_fragments": 56, "total_fragments": 154, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga palleronii", "strain": "strain=NBRC 102513", "accession": "GCA_001571225.1", "taxid": 65655, "species_taxid": 65655, "relation_to_type": "type", "validated": true, "ani": 78.188, "matched_fragments": 62, "total_fragments": 154, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax wautersii", "strain": "strain=DSM 27981", "accession": "GCA_900113035.1", "taxid": 1177982, "species_taxid": 1177982, "relation_to_type": "type", "validated": true, "ani": 77.9818, "matched_fragments": 55, "total_fragments": 154, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter humi", "strain": "strain=18x22-1", "accession": "GCA_004681975.1", "taxid": 2530451, "species_taxid": 2530451, "relation_to_type": "type", "validated": true, "ani": 77.9497, "matched_fragments": 53, "total_fragments": 154, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax facilis", "strain": "strain=DSM 649", "accession": "GCA_023913775.1", "taxid": 12917, "species_taxid": 12917, "relation_to_type": "type", "validated": true, "ani": 77.9313, "matched_fragments": 52, "total_fragments": 154, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 49.71, "contamination": 1.14, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_903941205.1", "gtdb_species": "s__Polaromonas sp903941205", "ani": 81.2354, "matched_fragments": 107, "total_fragments": 154, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polaromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003711205.1", "gtdb_species": "s__Polaromonas sp003711205", "ani": 79.829, "matched_fragments": 79, "total_fragments": 154, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polaromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 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"f__Burkholderiaceae", "g__Polaromonas", "s__Polaromonas sp021737905", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Burkholderiales", "Burkholderiaceae", "Polaromonas", "Polaromonas", "sp021737905" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }