{ "type": "genome", "identifier": "GCA_904381345.1", "organism": "uncultured Neglectibacter sp.", "title": "uncultured Neglectibacter sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "THE ROSLIN INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCA_904381345.1", "bioproject": "PRJEB33338", "biosample": "SAMEA7202279", "wgs_master": "CAJFIH000000000.1", "refseq_category": "na", "taxid": "1924108", "species_taxid": "1924108", "organism_name": "uncultured Neglectibacter sp.", "infraspecific_name": "", "isolate": "Chicken_18_mag_113", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/25", "asm_name": "Chicken_18_mag_113", "submitter": "THE ROSLIN INSTITUTE", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/904/381/345/GCA_904381345.1_Chicken_18_mag_113", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-25", "dateModified": "2020-09-25", "datePublished": "2020-09-25", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Neglectibacter sp." ], "sample_taxid": [ "1924108" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom" ], "sample_host_location_id": [], "data_size": "0.578 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 84.38, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", 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"below_threshold" }, { "organism_name": "Dysosmobacter welbionis", "strain": "strain=J115", "accession": "GCA_005121165.3", "taxid": 2093857, "species_taxid": 2093857, "relation_to_type": "type", "validated": true, "ani": 76.1926, "matched_fragments": 56, "total_fragments": 618, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 84.38, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_904374805.1", "gtdb_species": "s__Acutalibacter sp904374805", "ani": 99.0189, "matched_fragments": 580, "total_fragments": 618, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Acutalibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.85", "min_intra_species_ani": "98.27", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.86", "num_clustered_genomes": 5, "status": "conclusive" }, { "accession": "GCA_000435395.1", "gtdb_species": 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"Acutalibacter", "pullicola" ], "_meo": [ { "id": "MEO_0000460", "label": "cecum" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }