{
    "type": "genome",
    "identifier": "GCA_904501975.1",
    "organism": "uncultured Akkermansia sp.",
    "title": "uncultured Akkermansia sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Shanghai MasScience Genomics Core",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_904501975.1",
        "bioproject": "PRJEB40266",
        "biosample": "SAMEA7322054",
        "wgs_master": "CAJGCZ000000000.1",
        "refseq_category": "na",
        "taxid": "512294",
        "species_taxid": "512294",
        "organism_name": "uncultured Akkermansia sp.",
        "infraspecific_name": "",
        "isolate": "MAG35",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/10/12",
        "asm_name": "MAG35",
        "submitter": "Shanghai MasScience Genomics Core",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/904/501/975/GCA_904501975.1_MAG35",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-10-12",
    "dateModified": "2020-10-12",
    "datePublished": "2020-10-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Akkermansia sp."
        ],
        "sample_taxid": [
            "512294"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "0.685 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 87.5,
        "contamination": 4.17,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2379091",
        "Number of Sequences": "109",
        "Longest Sequences (bp)": "134681",
        "N50 (bp)": "39022",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "52.6",
        "Number of CDSs": "1933",
        "Average Protein Length": "346.8",
        "Coding Ratio (%)": "84.5",
        "Number of rRNAs": "0",
        "Number of tRNAs": "41",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 87.5,
            "contamination": 4.17,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_904501975.1",
                "gtdb_species": "s__Akkermansia sp904501975",
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                "matched_fragments": 736,
                "total_fragments": 740,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Akkermansia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_017549485.1",
                "gtdb_species": "s__Akkermansia sp017549485",
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                "matched_fragments": 310,
                "total_fragments": 740,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Akkermansia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.15",
                "min_intra_species_ani": "98.15",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_904501955.1",
                "gtdb_species": "s__Akkermansia sp904501955",
                "ani": 80.1477,
                "matched_fragments": 282,
                "total_fragments": 740,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Akkermansia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017399165.1",
                "gtdb_species": "s__Akkermansia sp017399165",
                "ani": 79.9769,
                "matched_fragments": 353,
                "total_fragments": 740,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Akkermansia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.76",
                "min_intra_species_ani": "96.76",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_015062055.1",
                "gtdb_species": "s__Akkermansia sp015062055",
                "ani": 79.7548,
                "matched_fragments": 278,
                "total_fragments": 740,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Akkermansia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015062045.1",
                "gtdb_species": "s__Akkermansia sp015062045",
                "ani": 79.7013,
                "matched_fragments": 309,
                "total_fragments": 740,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Akkermansia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017415995.1",
                "gtdb_species": "s__Akkermansia sp017415995",
                "ani": 79.1113,
                "matched_fragments": 262,
                "total_fragments": 740,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Akkermansia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017558555.1",
                "gtdb_species": "s__Akkermansia sp017558555",
                "ani": 78.9481,
                "matched_fragments": 174,
                "total_fragments": 740,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Akkermansia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015062015.1",
                "gtdb_species": "s__Akkermansia sp015062015",
                "ani": 78.8966,
                "matched_fragments": 234,
                "total_fragments": 740,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Akkermansia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017477935.1",
                "gtdb_species": "s__Akkermansia sp017477935",
                "ani": 78.8076,
                "matched_fragments": 181,
                "total_fragments": 740,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Akkermansia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017390945.1",
                "gtdb_species": "s__Akkermansia sp017390945",
                "ani": 78.7135,
                "matched_fragments": 225,
                "total_fragments": 740,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Akkermansia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900766865.1",
                "gtdb_species": "s__Akkermansia sp900766865",
                "ani": 78.3672,
                "matched_fragments": 152,
                "total_fragments": 740,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Akkermansia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017398355.1",
                "gtdb_species": "s__Akkermansia sp017398355",
                "ani": 78.2141,
                "matched_fragments": 135,
                "total_fragments": 740,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Akkermansia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017435505.1",
                "gtdb_species": "s__Akkermansia sp017435505",
                "ani": 77.8836,
                "matched_fragments": 153,
                "total_fragments": 740,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Akkermansia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.17",
                "min_intra_species_ani": "97.17",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.222,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": null,
        "genome_size": 2880686.548,
        "gc_content": 56.683,
        "coding_genes": 2373.375,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 50.5,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
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        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 1.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Verrucomicrobiota",
        "c__Verrucomicrobiae",
        "o__Verrucomicrobiales",
        "f__Akkermansiaceae",
        "g__Akkermansia",
        "s__Akkermansia sp904501975"
    ],
    "_genome_taxon": [
        "uncultured",
        "Akkermansia",
        "sp.",
        "d__Bacteria",
        "p__Verrucomicrobiota",
        "c__Verrucomicrobiae",
        "o__Verrucomicrobiales",
        "f__Akkermansiaceae",
        "g__Akkermansia",
        "s__Akkermansia sp904501975",
        "Bacteria",
        "Verrucomicrobiota",
        "Verrucomicrobiae",
        "Verrucomicrobiales",
        "Akkermansiaceae",
        "Akkermansia",
        "Akkermansia",
        "sp904501975"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}