{ "type": "genome", "identifier": "GCA_905176665.1", "organism": "Olavius algarvensis Delta 4 endosymbiont", "title": "Olavius algarvensis Delta 4 endosymbiont", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "MAX-PLANCK INSTITUTE FOR MARINE MICROBIOLOGY, BREMEN", "publication": [ {} ], "properties": { "assembly_accession": "GCA_905176665.1", "bioproject": "PRJEB42310", "biosample": "SAMEA7757633", "wgs_master": "CAJINA000000000.1", "refseq_category": "na", "taxid": "260707", "species_taxid": "260707", "organism_name": "Olavius algarvensis Delta 4 endosymbiont", "infraspecific_name": "", "isolate": "Delta4_OalgB6SA", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/10", "asm_name": "D4_OalgB6SA", "submitter": "MAX-PLANCK INSTITUTE FOR MARINE MICROBIOLOGY, BREMEN", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/176/665/GCA_905176665.1_D4_OalgB6SA", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-10", "dateModified": "2021-02-10", "datePublished": "2021-02-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Olavius algarvensis Delta 4 endosymbiont" ], "sample_taxid": [ "260707" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Italy" ], "sample_host_location_id": [], "data_size": "1.570 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5447957", "Number of Sequences": "140", "Longest Sequences (bp)": "333300", "N50 (bp)": "121536", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "54.0", "Number of CDSs": "4850", "Average Protein Length": "316.6", "Coding Ratio (%)": "84.6", "Number of rRNAs": "1", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Desulfococcus multivorans", "strain": "strain=DSM 2059", "accession": "GCA_002009335.2", "taxid": 897, "species_taxid": 897, "relation_to_type": "type", "validated": true, "ani": 76.5251, "matched_fragments": 69, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfococcus multivorans", "strain": "strain=DSM 2059", "accession": "GCA_900167235.1", "taxid": 897, "species_taxid": 897, "relation_to_type": "type", "validated": true, "ani": 76.5068, "matched_fragments": 69, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfococcus multivorans", "strain": "strain=DSM 2059", "accession": "GCA_000422185.1", "taxid": 897, "species_taxid": 897, "relation_to_type": "type", "validated": true, "ani": 76.47, "matched_fragments": 68, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfococcus multivorans", "strain": "strain=DSM 2059", "accession": "GCA_001854245.1", "taxid": 897, "species_taxid": 897, "relation_to_type": "type", "validated": true, "ani": 76.4436, "matched_fragments": 69, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfatitalea tepidiphila", "strain": "strain=S28bF", "accession": "GCA_001293685.1", "taxid": 1185843, "species_taxid": 1185843, "relation_to_type": "type", "validated": true, "ani": 76.2628, "matched_fragments": 109, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfosarcina ovata subsp. sediminis", "strain": "strain=28bB2T", "accession": "GCA_009688985.1", "taxid": 885957, "species_taxid": 83564, "relation_to_type": "type", "validated": true, "ani": 76.0633, "matched_fragments": 123, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfosarcina ovata subsp. ovata", "strain": "strain=oXyS1", "accession": "GCA_009689005.1", "taxid": 2752305, "species_taxid": 83564, "relation_to_type": "type", "validated": true, "ani": 76.0481, "matched_fragments": 131, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfosarcina cetonica", "strain": "strain=JCM 12296", "accession": "GCA_001311845.1", "taxid": 90730, "species_taxid": 90730, "relation_to_type": "type", "validated": true, "ani": 75.9782, "matched_fragments": 111, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_905176665.1", "gtdb_species": "s__CAJINA01 sp905176665", "ani": 100.0, "matched_fragments": 1755, "total_fragments": 1761, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__CAJINA01;g__CAJINA01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_001854245.1", "gtdb_species": "s__Desulfococcus multivorans", "ani": 76.7151, "matched_fragments": 71, "total_fragments": 1761, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfococcaceae;g__Desulfococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_011042305.1", "gtdb_species": "s__UBA2174 sp011042305", "ani": 76.1915, "matched_fragments": 91, "total_fragments": 1761, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__UBA2174;g__UBA2174", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009689005.1", "gtdb_species": "s__Desulfosarcina ovata", "ani": 76.0375, "matched_fragments": 132, "total_fragments": 1761, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfosarcinaceae;g__Desulfosarcina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.03", "min_intra_species_ani": "97.03", "mean_intra_species_af": "0.77", "min_intra_species_af": "0.77", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016342285.1", "gtdb_species": "s__JAEINQ01 sp016342285", "ani": 76.0326, "matched_fragments": 155, "total_fragments": 1761, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__JAEINQ01;g__JAEINQ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001303025.1", "gtdb_species": "s__SG8-13 sp001303025", "ani": 76.0234, "matched_fragments": 74, "total_fragments": 1761, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__SG8-13;g__SG8-13", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_011389855.1", "gtdb_species": "s__JAABTD01 sp011389855", "ani": 76.0145, "matched_fragments": 94, "total_fragments": 1761, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfococcaceae;g__JAABTD01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016735415.1", "gtdb_species": "s__JABZFP01 sp016735415", "ani": 75.982, "matched_fragments": 75, "total_fragments": 1761, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__UBA5852;g__JABZFP01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001311845.1", "gtdb_species": "s__Desulfosarcina cetonica", "ani": 75.9782, "matched_fragments": 111, "total_fragments": 1761, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfosarcinaceae;g__Desulfosarcina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.91", "min_intra_species_ani": "99.91", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_011390065.1", "gtdb_species": "s__JAABTD01 sp011390065", "ani": 75.907, "matched_fragments": 94, "total_fragments": 1761, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfococcaceae;g__JAABTD01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_011390345.1", "gtdb_species": "s__JAABSP01 sp011390345", "ani": 75.8637, "matched_fragments": 70, "total_fragments": 1761, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfococcaceae;g__JAABSP01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.08", "min_intra_species_ani": "95.08", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.82", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_003599575.1", "gtdb_species": "s__Desulfatitalea sp003599575", "ani": 75.7281, "matched_fragments": 77, "total_fragments": 1761, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfosarcinaceae;g__Desulfatitalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Desulfobacterota", "c__Desulfobacteria", "o__Desulfobacterales", "f__CAJINA01", "g__CAJINA01", "s__CAJINA01 sp905176665" ], "_genome_taxon": [ "Olavius", "algarvensis", "Delta", "4", "endosymbiont", "d__Bacteria", "p__Desulfobacterota", "c__Desulfobacteria", "o__Desulfobacterales", "f__CAJINA01", "g__CAJINA01", "s__CAJINA01 sp905176665", "Bacteria", "Desulfobacterota", "Desulfobacteria", "Desulfobacterales", "CAJINA01", "CAJINA01", "CAJINA01", "sp905176665" ], "_meo": [ { "id": "MEO_0000040", "label": "marine sediment" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }