{ "type": "genome", "identifier": "GCA_905181975.1", "organism": "uncultured Rhodobacteraceae bacterium", "title": "uncultured Rhodobacteraceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY", "publication": [ {} ], "properties": { "assembly_accession": "GCA_905181975.1", "bioproject": "PRJEB41592", "biosample": "SAMEA7768510", "wgs_master": "CAJJAD000000000.1", "refseq_category": "na", "taxid": "157276", "species_taxid": "157276", "organism_name": "uncultured Rhodobacteraceae bacterium", "infraspecific_name": "", "isolate": "FRAM18_bin035", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/03", "asm_name": "FRAM18_bin035", "submitter": "MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/181/975/GCA_905181975.1_FRAM18_bin035", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-03", "dateModified": "2021-02-03", "datePublished": "2021-02-03", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Rhodobacteraceae bacterium" ], "sample_taxid": [ "157276" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.006 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3507420", "Number of Sequences": "109", "Longest Sequences (bp)": "115825", "N50 (bp)": "56487", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "52.6", "Number of CDSs": "3322", "Average Protein Length": "293.5", "Coding Ratio (%)": "83.4", "Number of rRNAs": "0", "Number of tRNAs": "29", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sulfitobacter sediminilitoris", "strain": "strain=JBTF-M27", "accession": "GCA_010667575.1", "taxid": 2698830, "species_taxid": 2698830, "relation_to_type": "type", "validated": true, "ani": 76.3714, "matched_fragments": 59, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter sabulilitoris", "strain": "strain=HSMS-29", "accession": "GCA_005887615.1", "taxid": 2562655, "species_taxid": 2562655, "relation_to_type": "type", "validated": true, "ani": 76.3578, "matched_fragments": 67, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodonghicola xiamenensis", "strain": "strain=DSM 18339", "accession": "GCA_000429365.1", "taxid": 337702, "species_taxid": 337702, "relation_to_type": "type", "validated": true, "ani": 76.2835, "matched_fragments": 74, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tritonibacter multivorans", "strain": "strain=CECT 7557", "accession": "GCA_001458415.1", "taxid": 928856, "species_taxid": 928856, "relation_to_type": "type", "validated": true, "ani": 76.2552, "matched_fragments": 58, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tritonibacter multivorans", "strain": "strain=DSM 26470", "accession": "GCA_900112515.1", "taxid": 928856, "species_taxid": 928856, "relation_to_type": "type", "validated": true, "ani": 76.2257, "matched_fragments": 59, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius nubinhibens", "strain": "strain=ISM", "accession": "GCA_000152625.1", "taxid": 314263, "species_taxid": 314263, "relation_to_type": "type", "validated": true, "ani": 76.2242, "matched_fragments": 94, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cribrihabitans marinus", "strain": "strain=CGMCC 1.13219", "accession": "GCA_014640375.1", "taxid": 1227549, "species_taxid": 1227549, "relation_to_type": "type", "validated": true, "ani": 76.204, "matched_fragments": 72, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cribrihabitans marinus", "strain": "strain=DSM 29340", "accession": "GCA_900109035.1", "taxid": 1227549, "species_taxid": 1227549, "relation_to_type": "type", "validated": true, "ani": 76.2025, "matched_fragments": 72, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliishimia ponticola", "strain": "strain=MYP11", "accession": "GCA_004803475.1", "taxid": 2499833, "species_taxid": 2499833, "relation_to_type": "type", "validated": true, "ani": 76.1534, "matched_fragments": 65, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phaeobacter gallaeciensis", "strain": "strain=DSM 26640", "accession": "GCA_000511385.1", "taxid": 60890, "species_taxid": 60890, "relation_to_type": "type", "validated": true, "ani": 76.1129, "matched_fragments": 72, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudophaeobacter arcticus", "strain": "strain=DSM 23566", "accession": "GCA_000473205.1", "taxid": 385492, "species_taxid": 385492, "relation_to_type": "type", "validated": true, "ani": 76.1044, "matched_fragments": 85, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Primorskyibacter marinus", "strain": "strain=PX7", "accession": "GCA_003313245.1", "taxid": 1977320, "species_taxid": 1977320, "relation_to_type": "type", "validated": true, "ani": 76.1031, "matched_fragments": 78, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phaeobacter gallaeciensis", "strain": "strain=DSM 26640", "accession": "GCA_000819625.1", "taxid": 60890, "species_taxid": 60890, "relation_to_type": "type", "validated": true, "ani": 76.0903, "matched_fragments": 73, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudopuniceibacterium antarcticum", "strain": "strain=HQ09", "accession": "GCA_014899185.1", "taxid": 2613965, "species_taxid": 2613965, "relation_to_type": "type", "validated": true, "ani": 76.0671, "matched_fragments": 56, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria pomeroyi", "strain": "strain=DSS-3", "accession": "GCA_000011965.2", "taxid": 89184, "species_taxid": 89184, "relation_to_type": "suspected-type", "validated": true, "ani": 76.0577, "matched_fragments": 91, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zongyanglinia marina", "strain": "strain=DSW4-44", "accession": "GCA_005771405.1", "taxid": 2578117, "species_taxid": 2578117, "relation_to_type": "type", "validated": true, "ani": 76.0146, "matched_fragments": 68, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter indolifex", "strain": "strain=DSM 14862", "accession": "GCA_022788655.1", "taxid": 225422, "species_taxid": 225422, "relation_to_type": "type", "validated": true, "ani": 75.9909, "matched_fragments": 78, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudophaeobacter flagellatus", "strain": "strain=MA21411-1", "accession": "GCA_021228235.1", "taxid": 2899119, "species_taxid": 2899119, "relation_to_type": "type", "validated": true, "ani": 75.9668, "matched_fragments": 80, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius lutimaris", "strain": "strain=DSM 28463", "accession": "GCA_900115165.1", "taxid": 1005928, "species_taxid": 1005928, "relation_to_type": "type", "validated": true, "ani": 75.9597, "matched_fragments": 111, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter maritimus", "strain": "strain=S0837", "accession": "GCA_013346665.1", "taxid": 2741719, "species_taxid": 2741719, "relation_to_type": "type", "validated": true, "ani": 75.9593, "matched_fragments": 75, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter marinus", "strain": "strain=DSM 23422", "accession": "GCA_900116285.1", "taxid": 394264, "species_taxid": 394264, "relation_to_type": "type", "validated": true, "ani": 75.9302, "matched_fragments": 79, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pacificitalea manganoxidans", "strain": "strain=DY25", "accession": "GCA_002504165.1", "taxid": 1411902, "species_taxid": 1411902, "relation_to_type": "type", "validated": true, "ani": 75.9063, "matched_fragments": 62, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliiroseovarius halocynthiae", "strain": "strain=MA1-10", "accession": "GCA_007004645.1", "taxid": 985055, "species_taxid": 985055, "relation_to_type": "type", "validated": true, "ani": 75.8884, "matched_fragments": 50, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseobacter cerasinus", "strain": "strain=AI77", "accession": "GCA_009811755.1", "taxid": 2602289, "species_taxid": 2602289, "relation_to_type": "type", "validated": true, "ani": 75.8621, "matched_fragments": 67, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zongyanglinia huanghaiensis", "strain": "strain=CY05", "accession": "GCA_009753675.1", "taxid": 2682100, "species_taxid": 2682100, "relation_to_type": "type", "validated": true, "ani": 75.8537, "matched_fragments": 64, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius litoreus", "strain": "strain=DSM 28249", "accession": "GCA_900142765.1", "taxid": 1155722, "species_taxid": 1155722, "relation_to_type": "type", "validated": true, "ani": 75.8314, "matched_fragments": 86, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter litoralis", "strain": "strain=DSM 17584", "accession": "GCA_900103185.1", "taxid": 335975, "species_taxid": 335975, "relation_to_type": "type", "validated": true, "ani": 75.7861, "matched_fragments": 75, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliiroseovarius sediminilitoris", "strain": "strain=DSM 29439", "accession": "GCA_900109955.1", "taxid": 1173584, "species_taxid": 1173584, "relation_to_type": "type", "validated": true, "ani": 75.7233, "matched_fragments": 58, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter donghicola", "strain": "strain=KCTC 12864", "accession": "GCA_000622405.1", "taxid": 421000, "species_taxid": 421000, "relation_to_type": "type", "validated": true, "ani": 75.686, "matched_fragments": 63, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tateyamaria pelophila", "strain": "strain=DSM 17270", "accession": "GCA_019966495.1", "taxid": 328415, "species_taxid": 328415, "relation_to_type": "type", "validated": true, "ani": 75.6692, "matched_fragments": 61, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter undariae", "strain": "strain=DSM 102234", "accession": "GCA_014196805.1", "taxid": 1563671, "species_taxid": 1563671, "relation_to_type": "type", "validated": true, "ani": 75.6003, "matched_fragments": 60, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_002336405.1", "gtdb_species": "s__CPC320 sp002336405", "ani": 99.4662, "matched_fragments": 835, "total_fragments": 1111, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__CPC320", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.74", "min_intra_species_ani": "97.78", "mean_intra_species_af": "0.79", "min_intra_species_af": "0.51", "num_clustered_genomes": 9, "status": "conclusive" }, { "accession": "GCA_002684375.1", "gtdb_species": "s__CPC320 sp002684375", "ani": 86.8, "matched_fragments": 811, "total_fragments": 1111, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__CPC320", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.52", "min_intra_species_ani": "98.26", "mean_intra_species_af": "0.79", "min_intra_species_af": "0.72", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCA_002726375.1", "gtdb_species": "s__CABZJG01 sp002726375", "ani": 76.6061, "matched_fragments": 62, "total_fragments": 1111, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__CABZJG01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.70", "min_intra_species_ani": "96.98", "mean_intra_species_af": "0.64", "min_intra_species_af": "0.64", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001458415.1", "gtdb_species": "s__Epibacterium multivorans", "ani": 76.2552, "matched_fragments": 58, "total_fragments": 1111, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Epibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003335585.1", "gtdb_species": "s__Sulfitobacter sp003335585", "ani": 76.2506, "matched_fragments": 70, "total_fragments": 1111, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Sulfitobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000152625.1", "gtdb_species": "s__Roseovarius nubinhibens", "ani": 76.2242, "matched_fragments": 94, "total_fragments": 1111, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Roseovarius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.78", "min_intra_species_ani": "96.50", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.84", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_900110775.1", "gtdb_species": "s__Litorimicrobium taeanense", "ani": 76.2237, "matched_fragments": 108, "total_fragments": 1111, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Litorimicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016801775.1", "gtdb_species": "s__Sulfitobacter mediterraneus_A", "ani": 76.2216, "matched_fragments": 89, "total_fragments": 1111, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Sulfitobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 16, "status": "-" }, { "accession": "GCF_900109035.1", "gtdb_species": "s__Cribrihabitans marinus", "ani": 76.2025, "matched_fragments": 72, "total_fragments": 1111, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Cribrihabitans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900109455.1", "gtdb_species": "s__Roseovarius azorensis", "ani": 76.1793, "matched_fragments": 70, "total_fragments": 1111, "gtdb_taxonomy": 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"d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Primorskyibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000011965.2", "gtdb_species": "s__Ruegeria_B pomeroyi", "ani": 76.0733, "matched_fragments": 90, "total_fragments": 1111, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Ruegeria_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.92", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.98", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_018524345.1", "gtdb_species": "s__KMM-3653 sp018524345", "ani": 75.9814, "matched_fragments": 63, "total_fragments": 1111, "gtdb_taxonomy": 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