{ "type": "genome", "identifier": "GCA_905182005.1", "organism": "Oceanospirillaceae bacterium ASP10-02a", "title": "Oceanospirillaceae bacterium ASP10-02a", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY", "publication": [ {} ], "properties": { "assembly_accession": "GCA_905182005.1", "bioproject": "PRJEB41592", "biosample": "SAMEA7768512", "wgs_master": "CAJIZM000000000.1", "refseq_category": "na", "taxid": "1622229", "species_taxid": "1622229", "organism_name": "Oceanospirillaceae bacterium ASP10-02a", "infraspecific_name": "", "isolate": "FRAM18_bin263", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/03", "asm_name": "FRAM18_bin263", "submitter": "MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/182/005/GCA_905182005.1_FRAM18_bin263", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-03", "dateModified": "2021-02-03", "datePublished": "2021-02-03", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Pseudomonadales bacterium" ], "sample_taxid": [ "332614" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.676 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 87.5, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2346893", "Number of Sequences": "75", "Longest Sequences (bp)": "186576", "N50 (bp)": "76982", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "45.2", "Number of CDSs": "2151", "Average Protein Length": "320.6", "Coding Ratio (%)": "88.2", "Number of rRNAs": "0", "Number of tRNAs": "32", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 87.5, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_002335115.1", "gtdb_species": "s__ASP10-02a sp002335115", "ani": 95.3562, "matched_fragments": 592, "total_fragments": 744, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Nitrincolaceae;g__ASP10-02a", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.15", "min_intra_species_ani": "95.37", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.79", "num_clustered_genomes": 13, "status": "conclusive" }, { "accession": "GCA_905182035.1", "gtdb_species": "s__ASP10-02a sp905182035", "ani": 79.2056, "matched_fragments": 372, "total_fragments": 744, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Nitrincolaceae;g__ASP10-02a", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002312935.1", "gtdb_species": "s__ASP10-02a sp002312935", "ani": 78.4204, "matched_fragments": 319, "total_fragments": 744, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Nitrincolaceae;g__ASP10-02a", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.42", "min_intra_species_ani": "99.42", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002470565.1", "gtdb_species": "s__ASP10-02a sp002470565", "ani": 78.2018, "matched_fragments": 236, "total_fragments": 744, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Nitrincolaceae;g__ASP10-02a", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.72", "min_intra_species_ani": "99.72", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_003523085.1", "gtdb_species": "s__ASP10-02a sp003523085", "ani": 77.6629, "matched_fragments": 175, "total_fragments": 744, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Nitrincolaceae;g__ASP10-02a", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018647765.1", "gtdb_species": "s__ASP10-02a sp018647765", "ani": 77.6227, "matched_fragments": 182, "total_fragments": 744, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Nitrincolaceae;g__ASP10-02a", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.86", "min_intra_species_ani": "99.85", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_003521845.1", "gtdb_species": "s__ASP10-02a sp003521845", "ani": 76.5413, "matched_fragments": 58, "total_fragments": 744, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Nitrincolaceae;g__ASP10-02a", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.309, "cell_length": 0.251, "doubling_h": 1.659, "growth_tmp": 25.318, "optimum_tmp": 27.678, "optimum_ph": 7.525, "genome_size": 4109665.431, "gc_content": 48.329, "coding_genes": 3948.866, "rRNA16S_genes": 5.15, "tRNA_genes": 63.2, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.977, "range_salinity": 1.0, "facultative_respiration": 0.14, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.859, "mesophilic_range_tmp": 0.5, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.5, "bacillus_cell_shape": 0.857, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.023, "spiral_cell_shape": 0.119 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Pseudomonadales", "f__Nitrincolaceae", "g__ASP10-02a", "s__ASP10-02a sp028825405" ], "_genome_taxon": [ "Oceanospirillaceae", "bacterium", "ASP10-02a", "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Pseudomonadales", "f__Nitrincolaceae", "g__ASP10-02a", "s__ASP10-02a sp028825405", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Pseudomonadales", "Nitrincolaceae", "ASP10-02a", "ASP10-02a", "sp028825405" ], "_meo": [ { "id": "MEO_0000041", "label": "marine water" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }