{
    "type": "genome",
    "identifier": "GCA_905182055.1",
    "organism": "alpha proteobacterium SCGC AAA536-G10",
    "title": "alpha proteobacterium SCGC AAA536-G10",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_905182055.1",
        "bioproject": "PRJEB41592",
        "biosample": "SAMEA7768521",
        "wgs_master": "CAJJAE000000000.1",
        "refseq_category": "na",
        "taxid": "1009708",
        "species_taxid": "1009708",
        "organism_name": "alpha proteobacterium SCGC AAA536-G10",
        "infraspecific_name": "",
        "isolate": "FRAM18_bin063",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/02/03",
        "asm_name": "FRAM18_bin063",
        "submitter": "MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/182/055/GCA_905182055.1_FRAM18_bin063",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-02-03",
    "dateModified": "2021-02-03",
    "datePublished": "2021-02-03",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Alphaproteobacteria bacterium"
        ],
        "sample_taxid": [
            "91750"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.682 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2363543",
        "Number of Sequences": "38",
        "Longest Sequences (bp)": "260428",
        "N50 (bp)": "75152",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "47.9",
        "Number of CDSs": "2502",
        "Average Protein Length": "270.9",
        "Coding Ratio (%)": "86.0",
        "Number of rRNAs": "2",
        "Number of tRNAs": "28",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Planktomarina temperata",
                "strain": "strain=RCA23",
                "accession": "GCA_000738435.1",
                "taxid": 1284658,
                "species_taxid": 1284658,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0669,
                "matched_fragments": 185,
                "total_fragments": 767,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_905182535.1",
                "gtdb_species": "s__Planktomarina sp905182535",
                "ani": 98.4213,
                "matched_fragments": 632,
                "total_fragments": 767,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Planktomarina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.42",
                "min_intra_species_ani": "98.42",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_000981705.1",
                "gtdb_species": "s__Planktomarina sp000981705",
                "ani": 93.4598,
                "matched_fragments": 633,
                "total_fragments": 767,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Planktomarina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.80",
                "min_intra_species_ani": "98.80",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_905182455.1",
                "gtdb_species": "s__Planktomarina sp905182455",
                "ani": 81.3775,
                "matched_fragments": 381,
                "total_fragments": 767,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Planktomarina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_905182195.1",
                "gtdb_species": "s__Planktomarina sp905182195",
                "ani": 80.3451,
                "matched_fragments": 370,
                "total_fragments": 767,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Planktomarina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000738435.1",
                "gtdb_species": "s__Planktomarina temperata",
                "ani": 78.0669,
                "matched_fragments": 185,
                "total_fragments": 767,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Planktomarina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.99",
                "min_intra_species_ani": "97.76",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 20,
                "status": "-"
            },
            {
                "accession": "GCA_905181815.1",
                "gtdb_species": "s__Planktomarina sp905181815",
                "ani": 77.9414,
                "matched_fragments": 190,
                "total_fragments": 767,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Planktomarina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002683685.1",
                "gtdb_species": "s__Planktomarina sp002683685",
                "ani": 77.7732,
                "matched_fragments": 122,
                "total_fragments": 767,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Planktomarina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.59",
                "min_intra_species_ani": "95.45",
                "mean_intra_species_af": "0.70",
                "min_intra_species_af": "0.67",
                "num_clustered_genomes": 6,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Rhodobacterales",
        "f__Rhodobacteraceae",
        "g__Planktomarina",
        "s__Planktomarina sp905182535"
    ],
    "_genome_taxon": [
        "alpha",
        "proteobacterium",
        "SCGC",
        "AAA536-G10",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Rhodobacterales",
        "f__Rhodobacteraceae",
        "g__Planktomarina",
        "s__Planktomarina sp905182535",
        "Bacteria",
        "Pseudomonadota",
        "Alphaproteobacteria",
        "Rhodobacterales",
        "Rhodobacteraceae",
        "Planktomarina",
        "Planktomarina",
        "sp905182535"
    ],
    "_meo": [
        {
            "id": "MEO_0000041",
            "label": "marine water"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}