{ "type": "genome", "identifier": "GCA_905182295.1", "organism": "uncultured Flavobacteriaceae bacterium", "title": "uncultured Flavobacteriaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY", "publication": [ {} ], "properties": { "assembly_accession": "GCA_905182295.1", "bioproject": "PRJEB41592", "biosample": "SAMEA7768557", "wgs_master": "CAJJAZ000000000.1", "refseq_category": "na", "taxid": "165436", "species_taxid": "165436", "organism_name": "uncultured Flavobacteriaceae bacterium", "infraspecific_name": "", "isolate": "FRAM18_bin216", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/03", "asm_name": "FRAM18_bin216", "submitter": "MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/182/295/GCA_905182295.1_FRAM18_bin216", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-03", "dateModified": "2021-02-03", "datePublished": "2021-02-03", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Flavobacteriaceae bacterium" ], "sample_taxid": [ "165436" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.385 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 75.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1358744", "Number of Sequences": "8", "Longest Sequences (bp)": "283581", "N50 (bp)": "271703", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.1", "Number of CDSs": "1211", "Average Protein Length": "344.7", "Coding Ratio (%)": "92.2", "Number of rRNAs": "1", "Number of tRNAs": "26", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cellulophaga lytica", "strain": "strain=DSM 7489", "accession": "GCA_000190595.1", "taxid": 979, "species_taxid": 979, "relation_to_type": "type", "validated": true, "ani": 76.9948, "matched_fragments": 63, "total_fragments": 449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter vaceletii", "strain": "strain=DSM 25230", "accession": "GCA_003634105.1", "taxid": 1206816, "species_taxid": 1206816, "relation_to_type": "type", "validated": true, "ani": 76.9849, "matched_fragments": 63, "total_fragments": 449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulophaga omnivescoria", "strain": "strain=W5C", "accession": "GCA_001999725.1", "taxid": 1888890, "species_taxid": 1888890, "relation_to_type": "type", "validated": true, "ani": 76.8293, "matched_fragments": 70, "total_fragments": 449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter hydrothermalis", "strain": "strain=T28", "accession": "GCA_001673755.1", "taxid": 1836467, "species_taxid": 1836467, "relation_to_type": "type", "validated": true, "ani": 76.804, "matched_fragments": 62, "total_fragments": 449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter hydrothermalis", "strain": "strain=T28", "accession": "GCA_001913155.1", "taxid": 1836467, "species_taxid": 1836467, "relation_to_type": "type", "validated": true, "ani": 76.764, "matched_fragments": 62, "total_fragments": 449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulophaga algicola", "strain": "strain=DSM 14237", "accession": "GCA_000186265.1", "taxid": 59600, "species_taxid": 59600, "relation_to_type": "type", "validated": true, "ani": 76.5887, "matched_fragments": 64, "total_fragments": 449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulophaga baltica", "strain": "strain=DSM 24729", "accession": "GCA_900102165.1", "taxid": 76594, "species_taxid": 76594, "relation_to_type": "type", "validated": true, "ani": 76.5871, "matched_fragments": 67, "total_fragments": 449, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter dokdonensis", "strain": "strain=DSW-8", "accession": "GCA_001447995.1", "taxid": 320912, "species_taxid": 320912, "relation_to_type": "type", "validated": true, "ani": 76.0935, "matched_fragments": 64, "total_fragments": 449, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 75.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, 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lytica", "ani": 76.9948, "matched_fragments": 63, "total_fragments": 449, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Cellulophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.01", "min_intra_species_ani": "98.71", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.93", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_003634105.1", "gtdb_species": "s__Maribacter_B vaceletii", "ani": 76.9849, "matched_fragments": 63, "total_fragments": 449, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Maribacter_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000186265.1", "gtdb_species": "s__Cellulophaga algicola", "ani": 76.6203, "matched_fragments": 63, 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0.01, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Flavobacteriales", "f__Flavobacteriaceae", "g__MAG-120531", "s__MAG-120531 sp905182295" ], "_genome_taxon": [ "uncultured", "Flavobacteriaceae", "bacterium", "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Flavobacteriales", "f__Flavobacteriaceae", "g__MAG-120531", "s__MAG-120531 sp905182295", "Bacteria", "Bacteroidota", "Bacteroidia", "Flavobacteriales", "Flavobacteriaceae", "MAG-120531", "MAG-120531", "sp905182295" ], "_meo": [ { "id": "MEO_0000041", "label": "marine water" } ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }