{ "type": "genome", "identifier": "GCA_905182705.1", "organism": "Kordiimonadaceae bacterium UBA4441", "title": "Kordiimonadaceae bacterium UBA4441", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY", "publication": [ {} ], "properties": { "assembly_accession": "GCA_905182705.1", "bioproject": "PRJEB41592", "biosample": "SAMEA7768582", "wgs_master": "CAJJCF000000000.1", "refseq_category": "na", "taxid": "1951965", "species_taxid": "1951965", "organism_name": "Kordiimonadaceae bacterium UBA4441", "infraspecific_name": "", "isolate": "FRAM18_bin077", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/03", "asm_name": "FRAM18_bin077", "submitter": "MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/182/705/GCA_905182705.1_FRAM18_bin077", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-03", "dateModified": "2021-02-03", "datePublished": "2021-02-03", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Sphingomonadales bacterium" ], "sample_taxid": [ "293405" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.535 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 92.59, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1862456", "Number of Sequences": "123", "Longest Sequences (bp)": "59864", "N50 (bp)": "21842", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.9", "Number of CDSs": "1614", "Average Protein Length": "329.2", "Coding Ratio (%)": "85.6", "Number of rRNAs": "0", "Number of tRNAs": "20", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudemcibacter aquimaris", "strain": "strain=Y4", "accession": "GCA_020748165.1", "taxid": 2857064, "species_taxid": 2857064, "relation_to_type": "type", "validated": true, "ani": 76.7608, "matched_fragments": 61, "total_fragments": 560, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 92.59, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_018675425.1", "gtdb_species": "s__UBA4441 sp018675425", "ani": 99.1384, "matched_fragments": 524, "total_fragments": 560, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Emcibacteraceae;g__UBA4441", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.54", "min_intra_species_ani": "99.14", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.86", "num_clustered_genomes": 6, "status": "conclusive" }, { "accession": "GCA_905612225.1", "gtdb_species": "s__UBA4441 sp905612225", "ani": 88.3798, "matched_fragments": 280, "total_fragments": 560, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Emcibacteraceae;g__UBA4441", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016763335.1", "gtdb_species": "s__UBA4441 sp016763335", "ani": 77.1242, "matched_fragments": 76, "total_fragments": 560, "gtdb_taxonomy": 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"d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Emcibacteraceae;g__UBA4441", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.68", "min_intra_species_ani": "99.64", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.88", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_018699075.1", "gtdb_species": "s__UBA4441 sp018699075", "ani": 76.1909, "matched_fragments": 75, "total_fragments": 560, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Emcibacteraceae;g__UBA4441", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.25", "min_intra_species_ani": "99.25", "mean_intra_species_af": "0.75", "min_intra_species_af": "0.75", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.316, "cell_length": 0.309, "doubling_h": null, "growth_tmp": 36.5, "optimum_tmp": 30.4, "optimum_ph": 6.937, "genome_size": 4216535.166, "gc_content": 56.91, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": null, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__Sphingomonadales", "f__Emcibacteraceae", "g__Pseudemcibacter", "s__Pseudemcibacter sp018675425" ], "_genome_taxon": [ "Kordiimonadaceae", "bacterium", "UBA4441", "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__Sphingomonadales", "f__Emcibacteraceae", "g__Pseudemcibacter", "s__Pseudemcibacter sp018675425", "Bacteria", "Pseudomonadota", "Alphaproteobacteria", "Sphingomonadales", "Emcibacteraceae", "Pseudemcibacter", "Pseudemcibacter", "sp018675425" ], "_meo": [ { "id": "MEO_0000041", "label": "marine water" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }