{
    "type": "genome",
    "identifier": "GCA_905193775.1",
    "organism": "uncultured Alistipes sp.",
    "title": "uncultured Alistipes sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "EMG",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_905193775.1",
        "bioproject": "PRJEB37358",
        "biosample": "SAMEA7847503",
        "wgs_master": "CAJJPY000000000.1",
        "refseq_category": "na",
        "taxid": "538949",
        "species_taxid": "538949",
        "organism_name": "uncultured Alistipes sp.",
        "infraspecific_name": "",
        "isolate": "ERR321629-bin.36",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/02/03",
        "asm_name": "ERR321629-mag-bin.36",
        "submitter": "EMG",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/193/775/GCA_905193775.1_ERR321629-mag-bin.36",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-02-03",
    "dateModified": "2021-02-03",
    "datePublished": "2021-02-03",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Alistipes sp."
        ],
        "sample_taxid": [
            "538949"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Denmark"
        ],
        "sample_host_location_id": [],
        "data_size": "0.686 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2396117",
        "Number of Sequences": "23",
        "Longest Sequences (bp)": "305464",
        "N50 (bp)": "161697",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "50.8",
        "Number of CDSs": "1917",
        "Average Protein Length": "369.3",
        "Coding Ratio (%)": "88.6",
        "Number of rRNAs": "1",
        "Number of tRNAs": "41",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Alistipes ihumii",
                "strain": "strain=AP11",
                "accession": "GCA_025144665.1",
                "taxid": 1470347,
                "species_taxid": 1470347,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.085,
                "matched_fragments": 170,
                "total_fragments": 786,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alistipes ihumii",
                "strain": "strain=AP11",
                "accession": "GCA_000321205.1",
                "taxid": 1470347,
                "species_taxid": 1470347,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0834,
                "matched_fragments": 164,
                "total_fragments": 786,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alistipes indistinctus",
                "strain": "strain=YIT 12060",
                "accession": "GCA_025144995.1",
                "taxid": 626932,
                "species_taxid": 626932,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5748,
                "matched_fragments": 112,
                "total_fragments": 786,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alistipes indistinctus",
                "strain": "strain=YIT 12060",
                "accession": "GCA_000231275.1",
                "taxid": 626932,
                "species_taxid": 626932,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5635,
                "matched_fragments": 115,
                "total_fragments": 786,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gallalistipes aquisgranensis",
                "strain": "strain=DSM 108975",
                "accession": "GCA_014982715.1",
                "taxid": 2779358,
                "species_taxid": 2779358,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3791,
                "matched_fragments": 86,
                "total_fragments": 786,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_900546005.1",
                "gtdb_species": "s__Alistipes_A pullicola",
                "ani": 97.982,
                "matched_fragments": 647,
                "total_fragments": 786,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.97",
                "min_intra_species_ani": "97.84",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCA_019119305.1",
                "gtdb_species": "s__Alistipes_A merdigallinarum",
                "ani": 86.8285,
                "matched_fragments": 639,
                "total_fragments": 786,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009557455.1",
                "gtdb_species": "s__Alistipes_A pullistercoris",
                "ani": 77.9315,
                "matched_fragments": 247,
                "total_fragments": 786,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.39",
                "min_intra_species_ani": "98.63",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 13,
                "status": "-"
            },
            {
                "accession": "GCA_910583985.1",
                "gtdb_species": "s__Alistipes_A sp910583985",
                "ani": 77.3543,
                "matched_fragments": 174,
                "total_fragments": 786,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000321205.1",
                "gtdb_species": "s__Alistipes_A ihumii",
                "ani": 77.0834,
                "matched_fragments": 164,
                "total_fragments": 786,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.03",
                "min_intra_species_ani": "98.23",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_900549685.1",
                "gtdb_species": "s__Alistipes_A sp900549685",
                "ani": 77.0054,
                "matched_fragments": 127,
                "total_fragments": 786,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000231275.1",
                "gtdb_species": "s__Alistipes_A indistinctus",
                "ani": 76.5614,
                "matched_fragments": 115,
                "total_fragments": 786,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.29",
                "min_intra_species_ani": "99.01",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_900545315.1",
                "gtdb_species": "s__Alistipes_A sp900545315",
                "ani": 76.5011,
                "matched_fragments": 106,
                "total_fragments": 786,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.6,
        "cell_length": -0.098,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": 7.0,
        "genome_size": 3170459.528,
        "gc_content": 56.414,
        "coding_genes": 2833.0,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 48.0,
        "gram_stain": 0.166,
        "sporulation": 0.0,
        "motility": 0.166,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.833,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.166,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Rikenellaceae",
        "g__Alistipes_A",
        "s__Alistipes_A pullicola"
    ],
    "_genome_taxon": [
        "uncultured",
        "Alistipes",
        "sp.",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Rikenellaceae",
        "g__Alistipes_A",
        "s__Alistipes_A pullicola",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "Rikenellaceae",
        "Alistipes",
        "A",
        "Alistipes",
        "A",
        "pullicola"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}