{
    "type": "genome",
    "identifier": "GCA_905197545.1",
    "organism": "Faecalicatena orotica",
    "title": "Faecalicatena orotica",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "EMG",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_905197545.1",
        "bioproject": "PRJEB37358",
        "biosample": "SAMEA7848303",
        "wgs_master": "CAJJZH000000000.1",
        "refseq_category": "na",
        "taxid": "1544",
        "species_taxid": "1544",
        "organism_name": "Faecalicatena orotica",
        "infraspecific_name": "",
        "isolate": "SRR5713946-bin.7",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/02/04",
        "asm_name": "SRR5713946-mag-bin.7",
        "submitter": "EMG",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/197/545/GCA_905197545.1_SRR5713946-mag-bin.7",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-02-04",
    "dateModified": "2021-02-04",
    "datePublished": "2021-02-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Faecalicatena orotica"
        ],
        "sample_taxid": [
            "1544"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Spain"
        ],
        "sample_host_location_id": [],
        "data_size": "1.473 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "5187896",
        "Number of Sequences": "30",
        "Longest Sequences (bp)": "821531",
        "N50 (bp)": "377131",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "45.2",
        "Number of CDSs": "4645",
        "Average Protein Length": "336.8",
        "Coding Ratio (%)": "90.5",
        "Number of rRNAs": "0",
        "Number of tRNAs": "42",
        "Number of CRISPRs": "5"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Faecalicatena faecalis",
                "strain": "strain=AGMB00832",
                "accession": "GCA_012524165.2",
                "taxid": 2726362,
                "species_taxid": 2726362,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4371,
                "matched_fragments": 622,
                "total_fragments": 1712,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Ruminococcus] gnavus",
                "strain": "strain=ATCC 29149",
                "accession": "GCA_002959615.1",
                "taxid": 33038,
                "species_taxid": 33038,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.3989,
                "matched_fragments": 216,
                "total_fragments": 1712,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Ruminococcus] gnavus",
                "strain": "strain=ATCC 29149",
                "accession": "GCA_009831375.1",
                "taxid": 33038,
                "species_taxid": 33038,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.3632,
                "matched_fragments": 214,
                "total_fragments": 1712,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Ruminococcus] gnavus",
                "strain": "strain=ATCC 29149",
                "accession": "GCA_000169475.1",
                "taxid": 33038,
                "species_taxid": 33038,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.2951,
                "matched_fragments": 213,
                "total_fragments": 1712,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Ruminococcus] gnavus",
                "strain": "strain=JCM6515",
                "accession": "GCA_008121495.1",
                "taxid": 33038,
                "species_taxid": 33038,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.2728,
                "matched_fragments": 221,
                "total_fragments": 1712,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Luxibacter massiliensis",
                "strain": "strain=Marseille-P5551",
                "accession": "GCA_900604355.1",
                "taxid": 2219695,
                "species_taxid": 2219695,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2151,
                "matched_fragments": 268,
                "total_fragments": 1712,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Ruminococcus] gnavus",
                "strain": "strain=ATCC 29149",
                "accession": "GCA_025152275.1",
                "taxid": 33038,
                "species_taxid": 33038,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2063,
                "matched_fragments": 222,
                "total_fragments": 1712,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Blautia wexlerae",
                "strain": "strain=DSM 19850",
                "accession": "GCA_025148125.1",
                "taxid": 418240,
                "species_taxid": 418240,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.0617,
                "matched_fragments": 73,
                "total_fragments": 1712,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Muricomes intestini",
                "strain": "strain=DSM 29489",
                "accession": "GCA_004346165.1",
                "taxid": 1796634,
                "species_taxid": 1796634,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0089,
                "matched_fragments": 253,
                "total_fragments": 1712,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dorea longicatena",
                "strain": "strain=DSM 13814",
                "accession": "GCA_025150085.1",
                "taxid": 88431,
                "species_taxid": 88431,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8577,
                "matched_fragments": 112,
                "total_fragments": 1712,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Ruminococcus] lactaris",
                "strain": "strain=ATCC 29176",
                "accession": "GCA_025152405.1",
                "taxid": 46228,
                "species_taxid": 46228,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6898,
                "matched_fragments": 133,
                "total_fragments": 1712,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Ruminococcus] lactaris",
                "strain": "strain=ATCC 29176",
                "accession": "GCA_000155205.1",
                "taxid": 46228,
                "species_taxid": 46228,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6148,
                "matched_fragments": 132,
                "total_fragments": 1712,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dorea phocaeensis",
                "strain": "strain=Marseille-P4003",
                "accession": "GCA_900240315.1",
                "taxid": 2040291,
                "species_taxid": 2040291,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.118,
                "matched_fragments": 104,
                "total_fragments": 1712,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Clostridium] hylemonae",
                "strain": "strain=DSM 15053",
                "accession": "GCA_000156515.1",
                "taxid": 89153,
                "species_taxid": 89153,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0388,
                "matched_fragments": 138,
                "total_fragments": 1712,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Blautia marasmi",
                "strain": "strain=Marseille-P2377",
                "accession": "GCA_900258535.1",
                "taxid": 1917868,
                "species_taxid": 1917868,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.5441,
                "matched_fragments": 95,
                "total_fragments": 1712,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003149245.1",
                "gtdb_species": "s__Muricomes oroticus",
                "ani": 98.3688,
                "matched_fragments": 1506,
                "total_fragments": 1712,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Muricomes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.83",
                "min_intra_species_ani": "98.40",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 5,
                "status": "conclusive"
            },
            {
                "accession": "GCF_012524165.2",
                "gtdb_species": "s__Muricomes sp012524165",
                "ani": 80.4338,
                "matched_fragments": 622,
                "total_fragments": 1712,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Muricomes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001028025.1",
                "gtdb_species": "s__Muricomes fissicatena_A",
                "ani": 79.6106,
                "matched_fragments": 495,
                "total_fragments": 1712,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Muricomes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.01",
                "min_intra_species_ani": "99.01",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_000509105.1",
                "gtdb_species": "s__Muricomes sp000509105",
                "ani": 79.4729,
                "matched_fragments": 448,
                "total_fragments": 1712,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Muricomes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.47",
                "min_intra_species_ani": "98.94",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_001404335.1",
                "gtdb_species": "s__Muricomes contortus_B",
                "ani": 79.0172,
                "matched_fragments": 486,
                "total_fragments": 1712,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Muricomes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.80",
                "min_intra_species_ani": "98.64",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_013911065.1",
                "gtdb_species": "s__Muricomes sp013911065",
                "ani": 78.7148,
                "matched_fragments": 305,
                "total_fragments": 1712,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Muricomes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003149105.1",
                "gtdb_species": "s__Muricomes contortus_C",
                "ani": 78.6485,
                "matched_fragments": 323,
                "total_fragments": 1712,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Muricomes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_008121495.1",
                "gtdb_species": "s__Ruminococcus_B gnavus",
                "ani": 78.2708,
                "matched_fragments": 220,
                "total_fragments": 1712,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Ruminococcus_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.58",
                "min_intra_species_ani": "96.13",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.66",
                "num_clustered_genomes": 102,
                "status": "-"
            },
            {
                "accession": "GCA_004556565.1",
                "gtdb_species": "s__Schaedlerella sp004556565",
                "ani": 77.5904,
                "matched_fragments": 128,
                "total_fragments": 1712,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Schaedlerella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_905203555.1",
                "gtdb_species": "s__Schaedlerella sp905203555",
                "ani": 77.3679,
                "matched_fragments": 137,
                "total_fragments": 1712,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Schaedlerella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900765975.1",
                "gtdb_species": "s__Schaedlerella sp900765975",
                "ani": 77.3494,
                "matched_fragments": 133,
                "total_fragments": 1712,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Schaedlerella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.94",
                "min_intra_species_ani": "99.94",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.222,
        "cell_length": 0.113,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 5717637.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Muricomes",
        "s__Muricomes oroticus"
    ],
    "_genome_taxon": [
        "Faecalicatena",
        "orotica",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Muricomes",
        "s__Muricomes oroticus",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Lachnospirales",
        "Lachnospiraceae",
        "Muricomes",
        "Muricomes",
        "oroticus"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}