{ "type": "genome", "identifier": "GCA_905197925.1", "organism": "Clostridia bacterium", "title": "Clostridia bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_905197925.1", "bioproject": "PRJEB37358", "biosample": "SAMEA7846344", "wgs_master": "CAJKAS000000000.1", "refseq_category": "na", "taxid": "2044939", "species_taxid": "2044939", "organism_name": "Clostridia bacterium", "infraspecific_name": "", "isolate": "ERR1190734-bin.13", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/03", "asm_name": "ERR1190734-mag-bin.13", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/197/925/GCA_905197925.1_ERR1190734-mag-bin.13", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-03", "dateModified": "2021-02-03", "datePublished": "2021-02-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Clostridia bacterium" ], "sample_taxid": [ "2044939" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.760 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2693399", "Number of Sequences": "48", "Longest Sequences (bp)": "463860", "N50 (bp)": "180173", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "45.3", "Number of CDSs": "2671", "Average Protein Length": "292.7", "Coding Ratio (%)": "87.1", "Number of rRNAs": "2", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Anaerotignum lactatifermentans", "strain": "strain=DSM 14214", "accession": "GCA_900142265.1", "taxid": 160404, "species_taxid": 160404, "relation_to_type": "suspected-type", "validated": true, "ani": 92.398, "matched_fragments": 712, "total_fragments": 875, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerotignum faecicola", "strain": "strain=KCTC 15736", "accession": "GCA_003865035.1", "taxid": 2358141, "species_taxid": 2358141, "relation_to_type": "type", "validated": true, "ani": 78.3893, "matched_fragments": 198, "total_fragments": 875, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerotignum propionicum", "strain": "strain=X2", "accession": "GCA_001561955.1", "taxid": 28446, "species_taxid": 28446, "relation_to_type": "type", "validated": true, "ani": 77.8362, "matched_fragments": 94, "total_fragments": 875, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerotignum propionicum", "strain": "strain=DSM 1682", "accession": "GCA_900129165.1", "taxid": 28446, "species_taxid": 28446, "relation_to_type": "type", "validated": true, "ani": 77.7245, "matched_fragments": 96, "total_fragments": 875, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerotignum neopropionicum", "strain": "strain=DSM-3847", "accession": "GCA_001571775.1", "taxid": 36847, "species_taxid": 36847, "relation_to_type": "type", "validated": true, "ani": 77.326, "matched_fragments": 92, "total_fragments": 875, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_001304995.1", "gtdb_species": "s__Anaerotignum sp001304995", "ani": 99.058, "matched_fragments": 795, "total_fragments": 875, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Anaerotignaceae;g__Anaerotignum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.57", "min_intra_species_ani": "97.74", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.89", "num_clustered_genomes": 6, "status": "conclusive" }, { "accession": "GCA_905212195.1", "gtdb_species": "s__Anaerotignum sp905212195", "ani": 93.03, "matched_fragments": 617, "total_fragments": 875, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Anaerotignaceae;g__Anaerotignum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900142265.1", "gtdb_species": "s__Anaerotignum lactatifermentans", "ani": 92.376, "matched_fragments": 713, "total_fragments": 875, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Anaerotignaceae;g__Anaerotignum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.69", "min_intra_species_ani": "96.94", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.80", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_016902535.1", "gtdb_species": "s__Anaerotignum lactatifermentans_A", "ani": 80.4405, "matched_fragments": 385, "total_fragments": 875, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Anaerotignaceae;g__Anaerotignum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_017483025.1", "gtdb_species": "s__Anaerotignum sp017483025", "ani": 79.6875, "matched_fragments": 241, "total_fragments": 875, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Anaerotignaceae;g__Anaerotignum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017442465.1", "gtdb_species": "s__Anaerotignum sp017442465", "ani": 79.5717, "matched_fragments": 173, "total_fragments": 875, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Anaerotignaceae;g__Anaerotignum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017560955.1", "gtdb_species": "s__Anaerotignum sp017560955", "ani": 79.1194, "matched_fragments": 129, "total_fragments": 875, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Anaerotignaceae;g__Anaerotignum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019115165.1", "gtdb_species": "s__Anaerotignum merdipullorum", "ani": 78.8415, "matched_fragments": 262, "total_fragments": 875, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Anaerotignaceae;g__Anaerotignum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.63", "min_intra_species_ani": "99.27", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.86", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003865035.1", "gtdb_species": "s__Anaerotignum faecicola", "ani": 78.3893, "matched_fragments": 198, "total_fragments": 875, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Anaerotignaceae;g__Anaerotignum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.42", "min_intra_species_ani": "97.62", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.80", "num_clustered_genomes": 12, "status": "-" }, { "accession": "GCA_905214825.1", "gtdb_species": "s__Anaerotignum sp905214825", "ani": 77.9215, "matched_fragments": 151, "total_fragments": 875, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Anaerotignaceae;g__Anaerotignum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Lachnospirales", "f__Anaerotignaceae", "g__Anaerotignum", "s__Anaerotignum sp001304995" ], "_genome_taxon": [ "Clostridia", "bacterium", "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Lachnospirales", "f__Anaerotignaceae", "g__Anaerotignum", "s__Anaerotignum sp001304995", "Bacteria", "Bacillota", "A", "Clostridia", "Lachnospirales", "Anaerotignaceae", "Anaerotignum", "Anaerotignum", "sp001304995" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }