{ "type": "genome", "identifier": "GCA_905199535.1", "organism": "uncultured Lactobacillus sp.", "title": "uncultured Lactobacillus sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_905199535.1", "bioproject": "PRJEB37358", "biosample": "SAMEA7846774", "wgs_master": "CAJKGZ000000000.1", "refseq_category": "na", "taxid": "153152", "species_taxid": "153152", "organism_name": "uncultured Lactobacillus sp.", "infraspecific_name": "", "isolate": "ERR1430548-bin.12", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/04", "asm_name": "ERR1430548-mag-bin.12", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/199/535/GCA_905199535.1_ERR1430548-mag-bin.12", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-04", "dateModified": "2021-02-04", "datePublished": "2021-02-04", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Lactobacillus sp." ], "sample_taxid": [ "153152" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.983 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3418137", "Number of Sequences": "75", "Longest Sequences (bp)": "557049", "N50 (bp)": "67656", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "46.6", "Number of CDSs": "3028", "Average Protein Length": "302.7", "Coding Ratio (%)": "80.4", "Number of rRNAs": "0", "Number of tRNAs": "47", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lactiplantibacillus pentosus", "strain": "strain=DSM 20314", "accession": "GCA_003641185.1", "taxid": 1589, "species_taxid": 1589, "relation_to_type": "type", "validated": true, "ani": 98.0928, "matched_fragments": 1013, "total_fragments": 1101, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lactiplantibacillus pentosus", "strain": "strain=ATCC 8041", "accession": "GCA_004354685.1", "taxid": 1589, "species_taxid": 1589, "relation_to_type": "type", "validated": true, "ani": 98.0712, "matched_fragments": 999, "total_fragments": 1101, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lactiplantibacillus pentosus", 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"strain=CGMCC 1.2437", "accession": "GCA_001434175.1", "taxid": 337330, "species_taxid": 1590, "relation_to_type": "type", "validated": true, "ani": 82.4745, "matched_fragments": 621, "total_fragments": 1101, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactiplantibacillus plantarum", "strain": "strain=DSM 20174", "accession": "GCA_014131735.1", "taxid": 1590, "species_taxid": 1590, "relation_to_type": "type", "validated": true, "ani": 82.4494, "matched_fragments": 640, "total_fragments": 1101, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Secundilactobacillus angelensis", "strain": "strain=HBUAS51383", "accession": "GCA_012641075.1", "taxid": 2722706, "species_taxid": 2722706, "relation_to_type": "type", "validated": true, "ani": 77.5908, "matched_fragments": 65, "total_fragments": 1101, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Secundilactobacillus collinoides", "strain": "strain=JCM 1123", 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