{
    "type": "genome",
    "identifier": "GCA_905200035.1",
    "organism": "Bifidobacterium dentium",
    "title": "Bifidobacterium dentium",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "EMG",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_905200035.1",
        "bioproject": "PRJEB37358",
        "biosample": "SAMEA7848362",
        "wgs_master": "CAJKIR000000000.1",
        "refseq_category": "na",
        "taxid": "1689",
        "species_taxid": "1689",
        "organism_name": "Bifidobacterium dentium",
        "infraspecific_name": "",
        "isolate": "SRR7721903-bin.1",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/02/03",
        "asm_name": "SRR7721903-mag-bin.1",
        "submitter": "EMG",
        "gbrs_paired_asm": "GCF_905200035.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/200/035/GCA_905200035.1_SRR7721903-mag-bin.1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-02-03",
    "dateModified": "2021-02-03",
    "datePublished": "2021-02-03",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bifidobacterium dentium"
        ],
        "sample_taxid": [
            "1689"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "0.722 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2553374",
        "Number of Sequences": "18",
        "Longest Sequences (bp)": "386467",
        "N50 (bp)": "187013",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "58.3",
        "Number of CDSs": "2103",
        "Average Protein Length": "356.9",
        "Coding Ratio (%)": "88.2",
        "Number of rRNAs": "1",
        "Number of tRNAs": "58",
        "Number of CRISPRs": "5"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Bifidobacterium dentium",
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                "accession": "GCA_001042595.1",
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                "species_taxid": 1689,
                "relation_to_type": "type",
                "validated": true,
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                "total_fragments": 841,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bifidobacterium dentium",
                "strain": "strain=NCTC11816",
                "accession": "GCA_900637175.1",
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                "species_taxid": 1689,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.6459,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bifidobacterium dentium",
                "strain": "strain=DSM 20436",
                "accession": "GCA_900105745.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 98.6134,
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                "total_fragments": 841,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bifidobacterium dentium",
                "strain": "strain=DSM 20436",
                "accession": "GCA_000771725.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 98.5939,
                "matched_fragments": 738,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bifidobacterium moukalabense",
                "strain": "strain=DSM 27321",
                "accession": "GCA_000522505.1",
                "taxid": 1333651,
                "species_taxid": 1333651,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.1358,
                "matched_fragments": 683,
                "total_fragments": 841,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium miconisargentati",
                "strain": "strain=82T25",
                "accession": "GCA_019331675.1",
                "taxid": 2834437,
                "species_taxid": 2834437,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.1288,
                "matched_fragments": 359,
                "total_fragments": 841,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium amazonense",
                "strain": "strain=MA1",
                "accession": "GCA_018555435.2",
                "taxid": 2809027,
                "species_taxid": 2809027,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.8908,
                "matched_fragments": 346,
                "total_fragments": 841,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium pseudolongum subsp. pseudolongum",
                "strain": "strain=ATCC 25526",
                "accession": "GCA_022691205.1",
                "taxid": 31954,
                "species_taxid": 1694,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6532,
                "matched_fragments": 219,
                "total_fragments": 841,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001042595.1",
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                "matched_fragments": 744,
                "total_fragments": 841,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.95",
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                "num_clustered_genomes": 50,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000522505.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.37",
                "min_intra_species_ani": "98.94",
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                "num_clustered_genomes": 13,
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            },
            {
                "accession": "GCF_000010425.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.09",
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                "num_clustered_genomes": 128,
                "status": "-"
            },
            {
                "accession": "GCA_002451435.1",
                "gtdb_species": "s__Bifidobacterium sp002451435",
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                "matched_fragments": 376,
                "total_fragments": 841,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium",
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                "status": "-"
            },
            {
                "accession": "GCF_001042615.1",
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                "matched_fragments": 453,
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            },
            {
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            },
            {
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            {
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                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
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        ]
    },
    "_bac2feature": {
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        "cell_diameter": -0.022,
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    "_gtdb_taxon": [
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    "_genome_taxon": [
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        "c__Actinomycetes",
        "o__Actinomycetales",
        "f__Bifidobacteriaceae",
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        "Bifidobacteriaceae",
        "Bifidobacterium",
        "Bifidobacterium",
        "dentium"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
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    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}