{ "type": "genome", "identifier": "GCA_905200355.1", "organism": "Klebsiella aerogenes", "title": "Klebsiella aerogenes", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_905200355.1", "bioproject": "PRJEB37358", "biosample": "SAMEA7846874", "wgs_master": "CAJKJV000000000.1", "refseq_category": "na", "taxid": "548", "species_taxid": "548", "organism_name": "Klebsiella aerogenes", "infraspecific_name": "", "isolate": "ERR1600603-bin.6", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/04", "asm_name": "ERR1600603-mag-bin.6", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/200/355/GCA_905200355.1_ERR1600603-mag-bin.6", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-04", "dateModified": "2021-02-04", "datePublished": "2021-02-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Klebsiella aerogenes" ], "sample_taxid": [ "548" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.507 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5297755", "Number of Sequences": "55", "Longest Sequences (bp)": "448550", "N50 (bp)": "170009", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "54.8", "Number of CDSs": "4964", "Average Protein Length": "315.0", "Coding Ratio (%)": "88.5", "Number of rRNAs": "1", "Number of tRNAs": "58", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Klebsiella aerogenes", "strain": "strain=KCTC 2190", "accession": "GCA_000215745.1", "taxid": 548, "species_taxid": 548, "relation_to_type": "type", "validated": true, "ani": 98.6185, "matched_fragments": 1576, "total_fragments": 1739, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Klebsiella aerogenes", "strain": "strain=FDAARGOS 1442", "accession": "GCA_019048125.1", "taxid": 548, "species_taxid": 548, "relation_to_type": "type", "validated": true, "ani": 98.5994, "matched_fragments": 1578, "total_fragments": 1739, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Klebsiella variicola", "strain": "strain=type strain: F2R9", "accession": "GCA_900978195.1", "taxid": 244366, "species_taxid": 244366, "relation_to_type": "type", "validated": 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1181, "total_fragments": 1739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella pneumoniae", "strain": "strain=PartO-Kpneumoniae-RM8376", "accession": "GCA_022869665.1", "taxid": 573, "species_taxid": 573, "relation_to_type": "type", "validated": true, "ani": 85.9747, "matched_fragments": 1206, "total_fragments": 1739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella pneumoniae subsp. pneumoniae", "strain": "strain=ATCC 13883", "accession": "GCA_000788015.1", "taxid": 72407, "species_taxid": 573, "relation_to_type": "type", "validated": true, "ani": 85.9666, "matched_fragments": 1241, "total_fragments": 1739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella pneumoniae", "strain": "strain=ATCC 13883", "accession": "GCA_000742135.1", "taxid": 573, "species_taxid": 573, "relation_to_type": "type", "validated": true, "ani": 85.9573, "matched_fragments": 1226, "total_fragments": 1739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella grimontii", "strain": "strain=06D021", "accession": "GCA_900200035.1", "taxid": 2058152, "species_taxid": 2058152, "relation_to_type": "type", "validated": true, "ani": 84.2555, "matched_fragments": 1172, "total_fragments": 1739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella michiganensis", "strain": "strain=DSM 25444", "accession": "GCA_002925905.1", "taxid": 1134687, "species_taxid": 1134687, "relation_to_type": "type", "validated": true, "ani": 84.1089, "matched_fragments": 1213, "total_fragments": 1739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella michiganensis", "strain": "strain=CCUG 66515", "accession": "GCA_009173485.1", "taxid": 1134687, "species_taxid": 1134687, "relation_to_type": "type", "validated": true, "ani": 84.1066, "matched_fragments": 1209, "total_fragments": 1739, "ani_threshold": 95, "status": 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"strain": "strain=DSM 16690", "accession": "GCA_024390995.1", "taxid": 1812935, "species_taxid": 1812935, "relation_to_type": "type", "validated": true, "ani": 81.7342, "matched_fragments": 889, "total_fragments": 1739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter sichuanensis", "strain": "strain=WCHECL1597", "accession": "GCA_025002605.1", "taxid": 2071710, "species_taxid": 2071710, "relation_to_type": "type", "validated": true, "ani": 81.576, "matched_fragments": 867, "total_fragments": 1739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter rodentium", "strain": "strain=DSM 16636", "accession": "GCA_021278985.1", "taxid": 67825, "species_taxid": 67825, "relation_to_type": "type", "validated": true, "ani": 81.3386, "matched_fragments": 868, "total_fragments": 1739, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000215745.1", "gtdb_species": "s__Klebsiella aerogenes", "ani": 98.6185, "matched_fragments": 1576, "total_fragments": 1739, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.40", "min_intra_species_ani": "95.78", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.85", "num_clustered_genomes": 341, "status": "conclusive" }, { "accession": "GCF_000828055.2", "gtdb_species": "s__Klebsiella variicola", "ani": 86.0922, "matched_fragments": 1224, "total_fragments": 1739, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.94", "min_intra_species_ani": "96.87", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.84", "num_clustered_genomes": 528, "status": 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