{
    "type": "genome",
    "identifier": "GCA_905200445.1",
    "organism": "Methanosphaera stadtmanae",
    "title": "Methanosphaera stadtmanae",
    "description": "derived from metagenome; incomplete metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "EMG",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_905200445.1",
        "bioproject": "PRJEB37358",
        "biosample": "SAMEA7847178",
        "wgs_master": "CAJKKI000000000.1",
        "refseq_category": "na",
        "taxid": "2317",
        "species_taxid": "2317",
        "organism_name": "Methanosphaera stadtmanae",
        "infraspecific_name": "",
        "isolate": "ERR260183-bin.3",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/02/03",
        "asm_name": "ERR260183-mag-bin.3",
        "submitter": "EMG",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/200/445/GCA_905200445.1_ERR260183-mag-bin.3",
        "excluded_from_refseq": "derived from metagenome; incomplete metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-02-03",
    "dateModified": "2021-02-03",
    "datePublished": "2021-02-03",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Methanosphaera stadtmanae"
        ],
        "sample_taxid": [
            "2317"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Sweden"
        ],
        "sample_host_location_id": [],
        "data_size": "0.363 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1321730",
        "Number of Sequences": "159",
        "Longest Sequences (bp)": "34274",
        "N50 (bp)": "11169",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "28.0",
        "Number of CDSs": "1194",
        "Average Protein Length": "280.1",
        "Coding Ratio (%)": "75.9",
        "Number of rRNAs": "0",
        "Number of tRNAs": "25",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Methanosphaera stadtmanae",
                "strain": "strain=DSM 3091",
                "accession": "GCA_000012545.1",
                "taxid": 2317,
                "species_taxid": 2317,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.6956,
                "matched_fragments": 351,
                "total_fragments": 356,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Methanosphaera cuniculi",
                "strain": "strain=1R-7",
                "accession": "GCA_002287195.1",
                "taxid": 1077256,
                "species_taxid": 1077256,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.5904,
                "matched_fragments": 190,
                "total_fragments": 356,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanosphaera cuniculi",
                "strain": "strain=DSM 4103",
                "accession": "GCA_003149675.1",
                "taxid": 1077256,
                "species_taxid": 1077256,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3944,
                "matched_fragments": 187,
                "total_fragments": 356,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 91.67,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000012545.1",
                "gtdb_species": "s__Methanosphaera stadtmanae",
                "ani": 99.6956,
                "matched_fragments": 351,
                "total_fragments": 356,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanosphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.82",
                "min_intra_species_ani": "99.70",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 6,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001729965.1",
                "gtdb_species": "s__Methanosphaera sp001729965",
                "ani": 82.0343,
                "matched_fragments": 248,
                "total_fragments": 356,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanosphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902782945.1",
                "gtdb_species": "s__Methanosphaera sp900322125",
                "ani": 80.58,
                "matched_fragments": 212,
                "total_fragments": 356,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanosphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.80",
                "min_intra_species_ani": "97.01",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_015062825.1",
                "gtdb_species": "s__Methanosphaera stadtmanae_A",
                "ani": 79.6407,
                "matched_fragments": 172,
                "total_fragments": 356,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanosphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003149675.1",
                "gtdb_species": "s__Methanosphaera cuniculi",
                "ani": 79.3959,
                "matched_fragments": 187,
                "total_fragments": 356,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanosphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.96",
                "min_intra_species_ani": "99.96",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017431845.1",
                "gtdb_species": "s__Methanosphaera sp017431845",
                "ani": 79.0028,
                "matched_fragments": 166,
                "total_fragments": 356,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanosphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.0,
        "cell_length": 0.0,
        "doubling_h": 0.707,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.5,
        "optimum_ph": 6.7,
        "genome_size": 1767402.4,
        "gc_content": 27.6,
        "coding_genes": 1523.0,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 41.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Archaea",
        "p__Methanobacteriota",
        "c__Methanobacteria",
        "o__Methanobacteriales",
        "f__Methanobacteriaceae",
        "g__Methanosphaera",
        "s__Methanosphaera stadtmanae"
    ],
    "_genome_taxon": [
        "Methanosphaera",
        "stadtmanae",
        "d__Archaea",
        "p__Methanobacteriota",
        "c__Methanobacteria",
        "o__Methanobacteriales",
        "f__Methanobacteriaceae",
        "g__Methanosphaera",
        "s__Methanosphaera stadtmanae",
        "Archaea",
        "Methanobacteriota",
        "Methanobacteria",
        "Methanobacteriales",
        "Methanobacteriaceae",
        "Methanosphaera",
        "Methanosphaera",
        "stadtmanae"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}