{
    "type": "genome",
    "identifier": "GCA_905201665.1",
    "organism": "uncultured Megasphaera sp.",
    "title": "uncultured Megasphaera sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "EMG",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_905201665.1",
        "bioproject": "PRJEB37358",
        "biosample": "SAMEA7848114",
        "wgs_master": "CAJKPD000000000.1",
        "refseq_category": "na",
        "taxid": "165188",
        "species_taxid": "165188",
        "organism_name": "uncultured Megasphaera sp.",
        "infraspecific_name": "",
        "isolate": "SRR413757-bin.20",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/02/03",
        "asm_name": "SRR413757-mag-bin.20",
        "submitter": "EMG",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/201/665/GCA_905201665.1_SRR413757-mag-bin.20",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-02-03",
    "dateModified": "2021-02-03",
    "datePublished": "2021-02-03",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Megasphaera sp."
        ],
        "sample_taxid": [
            "165188"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "0.740 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2572011",
        "Number of Sequences": "117",
        "Longest Sequences (bp)": "140528",
        "N50 (bp)": "38789",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "51.1",
        "Number of CDSs": "2298",
        "Average Protein Length": "320.5",
        "Coding Ratio (%)": "85.9",
        "Number of rRNAs": "0",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "6"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Megasphaera elsdenii",
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                "accession": "GCA_003010495.1",
                "taxid": 907,
                "species_taxid": 907,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6909,
                "matched_fragments": 240,
                "total_fragments": 797,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Megasphaera elsdenii",
                "strain": "strain=DSM 20460",
                "accession": "GCA_000283495.2",
                "taxid": 907,
                "species_taxid": 907,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6379,
                "matched_fragments": 250,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Megasphaera stantonii",
                "strain": "strain=AJH120",
                "accession": "GCA_003367905.1",
                "taxid": 2144175,
                "species_taxid": 2144175,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1581,
                "matched_fragments": 217,
                "total_fragments": 797,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Megasphaera massiliensis",
                "strain": "strain=NP3",
                "accession": "GCA_000455225.1",
                "taxid": 1232428,
                "species_taxid": 1232428,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.132,
                "matched_fragments": 201,
                "total_fragments": 797,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Megasphaera stantonii",
                "strain": "strain=AJH120",
                "accession": "GCA_003030445.1",
                "taxid": 2144175,
                "species_taxid": 2144175,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.047,
                "matched_fragments": 214,
                "total_fragments": 797,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "'Megasphaera vaginalis' Bordigoni et al. 2020",
                "strain": "strain=Marseille-P4857",
                "accession": "GCA_900240295.1",
                "taxid": 2045301,
                "species_taxid": 2045301,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1481,
                "matched_fragments": 96,
                "total_fragments": 797,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_014269395.1",
                "gtdb_species": "s__Caecibacter hominis",
                "ani": 99.8582,
                "matched_fragments": 760,
                "total_fragments": 797,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Caecibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.84",
                "min_intra_species_ani": "99.81",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003467125.1",
                "gtdb_species": "s__Caecibacter sp003467125",
                "ani": 79.2703,
                "matched_fragments": 332,
                "total_fragments": 797,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Caecibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.80",
                "min_intra_species_ani": "97.67",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_900095875.1",
                "gtdb_species": "s__Caecibacter massiliensis",
                "ani": 79.1934,
                "matched_fragments": 313,
                "total_fragments": 797,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Caecibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.76",
                "min_intra_species_ani": "97.64",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 18,
                "status": "-"
            },
            {
                "accession": "GCA_900548635.1",
                "gtdb_species": "s__Megasphaera sp900548635",
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                "matched_fragments": 193,
                "total_fragments": 797,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Megasphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.28",
                "min_intra_species_ani": "98.56",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_902388315.1",
                "gtdb_species": "s__Megasphaera sp902388315",
                "ani": 78.8234,
                "matched_fragments": 192,
                "total_fragments": 797,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Megasphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.43",
                "min_intra_species_ani": "99.12",
                "mean_intra_species_af": "0.87",
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                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_003010495.1",
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                "ani": 78.7087,
                "matched_fragments": 239,
                "total_fragments": 797,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Megasphaera",
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                "mean_intra_species_ani": "98.27",
                "min_intra_species_ani": "97.55",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 29,
                "status": "-"
            },
            {
                "accession": "GCF_000417505.1",
                "gtdb_species": "s__Megasphaera sp000417505",
                "ani": 78.5979,
                "matched_fragments": 258,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Megasphaera",
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                "mean_intra_species_ani": "99.18",
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                "num_clustered_genomes": 11,
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            },
            {
                "accession": "GCA_900752195.1",
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                "matched_fragments": 178,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Caecibacter",
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                "mean_intra_species_ani": "99.73",
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            },
            {
                "accession": "GCF_003367905.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Megasphaera",
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            {
                "accession": "GCA_900554215.1",
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            {
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Megasphaera",
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                "mean_intra_species_ani": "99.96",
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                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.079,
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        "tRNA_genes": 58.666,
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        "sporulation": 0.0,
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        "range_salinity": null,
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        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
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    "_gtdb_taxon": [
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        "p__Bacillota_C",
        "c__Negativicutes",
        "o__Veillonellales",
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        "g__Caecibacter",
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    ],
    "_genome_taxon": [
        "uncultured",
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        "sp.",
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        "p__Bacillota_C",
        "c__Negativicutes",
        "o__Veillonellales",
        "f__Megasphaeraceae",
        "g__Caecibacter",
        "s__Caecibacter hominis",
        "Bacteria",
        "Bacillota",
        "C",
        "Negativicutes",
        "Veillonellales",
        "Megasphaeraceae",
        "Caecibacter",
        "Caecibacter",
        "hominis"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}