{ "type": "genome", "identifier": "GCA_905201975.1", "organism": "uncultured Lachnoclostridium sp.", "title": "uncultured Lachnoclostridium sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_905201975.1", "bioproject": "PRJEB37358", "biosample": "SAMEA7847858", "wgs_master": "CAJKQA000000000.1", "refseq_category": "na", "taxid": "1586779", "species_taxid": "1586779", "organism_name": "uncultured Lachnoclostridium sp.", "infraspecific_name": "", "isolate": "ERR747990-bin.1", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/04", "asm_name": "ERR747990-mag-bin.1", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/201/975/GCA_905201975.1_ERR747990-mag-bin.1", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-04", "dateModified": "2021-02-04", "datePublished": "2021-02-04", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Lachnoclostridium sp." ], "sample_taxid": [ "1586779" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany" ], "sample_host_location_id": [], "data_size": "1.203 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4198502", "Number of Sequences": "171", "Longest Sequences (bp)": "118945", "N50 (bp)": "38364", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "49.7", "Number of CDSs": "4141", "Average Protein Length": "291.1", "Coding Ratio (%)": "86.1", "Number of rRNAs": "0", "Number of tRNAs": "48", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enterocloster clostridioformis", "strain": "strain=NCTC11224", "accession": "GCA_900447015.1", "taxid": 1531, "species_taxid": 1531, "relation_to_type": "suspected-type", "validated": true, "ani": 94.1826, "matched_fragments": 1081, "total_fragments": 1318, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster clostridioformis", "strain": "strain=FDAARGOS_1529", "accession": "GCA_020297485.1", "taxid": 1531, "species_taxid": 1531, "relation_to_type": "suspected-type", "validated": true, "ani": 94.1754, "matched_fragments": 1078, "total_fragments": 1318, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster clostridioformis", "strain": "strain=ATCC 25537", "accession": "GCA_900113155.1", "taxid": 1531, "species_taxid": 1531, "relation_to_type": "type", "validated": true, "ani": 93.86, "matched_fragments": 1065, "total_fragments": 1318, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster bolteae", "strain": "strain=ATCC BAA-613", "accession": "GCA_000154365.1", "taxid": 208479, "species_taxid": 208479, "relation_to_type": "type", "validated": true, "ani": 91.866, "matched_fragments": 962, "total_fragments": 1318, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster bolteae", "strain": "strain=ATCC BAA-613", "accession": "GCA_002959675.1", "taxid": 208479, "species_taxid": 208479, "relation_to_type": "type", "validated": true, "ani": 91.8348, "matched_fragments": 969, "total_fragments": 1318, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster bolteae", "strain": "strain=ATCC BAA-613", "accession": "GCA_002234575.2", "taxid": 208479, "species_taxid": 208479, "relation_to_type": "type", "validated": true, "ani": 91.8326, "matched_fragments": 971, "total_fragments": 1318, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eisenbergiella porci", "strain": "strain=WCA-389-WT-23B", "accession": "GCA_009696275.1", "taxid": 2652274, "species_taxid": 2652274, "relation_to_type": "type", "validated": true, "ani": 78.5847, "matched_fragments": 93, "total_fragments": 1318, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster asparagiformis", "strain": "strain=DSM 15981", "accession": "GCA_025149125.1", "taxid": 333367, "species_taxid": 333367, "relation_to_type": "type", "validated": true, "ani": 78.5747, "matched_fragments": 359, "total_fragments": 1318, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hungatella hathewayi", "strain": "strain=DSM 13479", "accession": "GCA_025149285.1", "taxid": 154046, "species_taxid": 154046, "relation_to_type": "suspected-type", "validated": true, "ani": 78.3721, "matched_fragments": 182, "total_fragments": 1318, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetatifactor muris", "strain": "strain=DSM 23669", "accession": "GCA_024623325.1", "taxid": 879566, "species_taxid": 879566, "relation_to_type": "type", "validated": true, "ani": 78.2691, "matched_fragments": 60, "total_fragments": 1318, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eisenbergiella massiliensis", "strain": "strain=AT11", "accession": "GCA_900243045.1", "taxid": 1720294, "species_taxid": 1720294, "relation_to_type": "type", "validated": true, "ani": 76.7188, "matched_fragments": 84, "total_fragments": 1318, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": 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