{ "type": "genome", "identifier": "GCA_905202935.1", "organism": "uncultured Clostridium sp.", "title": "uncultured Clostridium sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_905202935.1", "bioproject": "PRJEB37358", "biosample": "SAMEA7846772", "wgs_master": "CAJKTY000000000.1", "refseq_category": "na", "taxid": "59620", "species_taxid": "59620", "organism_name": "uncultured Clostridium sp.", "infraspecific_name": "", "isolate": "ERR1430547-bin.4", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/04", "asm_name": "ERR1430547-mag-bin.4", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/202/935/GCA_905202935.1_ERR1430547-mag-bin.4", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-04", "dateModified": "2021-02-04", "datePublished": "2021-02-04", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Clostridium sp." ], "sample_taxid": [ "59620" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.237 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 81.25, "contamination": 2.08, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4491454", "Number of Sequences": "345", "Longest Sequences (bp)": "78381", "N50 (bp)": "19104", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "28.4", "Number of CDSs": "3975", "Average Protein Length": "303.7", "Coding Ratio (%)": "80.6", "Number of rRNAs": "2", "Number of tRNAs": "34", "Number of CRISPRs": "6" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Clostridium neonatale", "strain": "strain=LCDC no.99-A-005", "accession": "GCA_001458595.1", "taxid": 137838, "species_taxid": 137838, "relation_to_type": "type", "validated": true, "ani": 99.1552, "matched_fragments": 1196, "total_fragments": 1331, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Clostridium neonatale", "strain": "strain=LCDC 99A005", "accession": "GCA_002553615.1", "taxid": 137838, "species_taxid": 137838, "relation_to_type": "type", "validated": true, "ani": 99.1398, "matched_fragments": 1197, "total_fragments": 1331, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Clostridium butyricum", "strain": "strain=NBRC 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169679, "species_taxid": 169679, "relation_to_type": "type", "validated": true, "ani": 78.5664, "matched_fragments": 400, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium beijerinckii", "strain": "strain=DSM 791", "accession": "GCA_018223745.1", "taxid": 1520, "species_taxid": 1520, "relation_to_type": "suspected-type", "validated": true, "ani": 78.5203, "matched_fragments": 417, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium chromiireducens", "strain": "strain=DSM 23318", "accession": "GCA_002029255.1", "taxid": 225345, "species_taxid": 225345, "relation_to_type": "type", "validated": true, "ani": 78.5136, "matched_fragments": 395, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium beijerinckii", "strain": "strain=DSM 791", "accession": "GCA_002006445.1", "taxid": 1520, "species_taxid": 1520, "relation_to_type": "suspected-type", "validated": true, "ani": 78.4178, "matched_fragments": 400, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium puniceum", "strain": "strain=DSM 2619", "accession": "GCA_002006345.1", "taxid": 29367, "species_taxid": 29367, "relation_to_type": "type", "validated": true, "ani": 78.3094, "matched_fragments": 463, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium saccharoperbutylacetonicum", "strain": "strain=ATCC 27021", "accession": "GCA_000334435.1", "taxid": 36745, "species_taxid": 36745, "relation_to_type": "type", "validated": true, "ani": 78.2062, "matched_fragments": 420, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium saccharoperbutylacetonicum", "strain": "strain=N1-4(HMT)", "accession": "GCA_000340885.1", "taxid": 36745, "species_taxid": 36745, "relation_to_type": "type", "validated": true, "ani": 78.189, "matched_fragments": 436, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium weizhouense", "strain": "strain=YB-6", "accession": "GCA_019431045.1", "taxid": 2859781, "species_taxid": 2859781, "relation_to_type": "type", "validated": true, "ani": 78.054, "matched_fragments": 369, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium cagae", "strain": "strain=Marseille-P4344", "accession": "GCA_900290265.1", "taxid": 2080751, "species_taxid": 2080751, "relation_to_type": "type", "validated": true, "ani": 78.0362, "matched_fragments": 351, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium uliginosum", "strain": "strain=DSM 12992", "accession": "GCA_900112485.1", "taxid": 119641, "species_taxid": 119641, "relation_to_type": "type", "validated": true, "ani": 78.0234, 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1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Abyssisolibacter fermentans", "strain": "strain=MCWD3", "accession": "GCA_001559865.1", "taxid": 1766203, "species_taxid": 1766203, "relation_to_type": "type", "validated": true, "ani": 74.7684, "matched_fragments": 93, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 81.25, "contamination": 2.08, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_001458595.1", "gtdb_species": "s__Clostridium neonatale", "ani": 99.1552, "matched_fragments": 1196, "total_fragments": 1331, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.07", "min_intra_species_ani": "98.42", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.80", "num_clustered_genomes": 11, "status": "conclusive" }, { "accession": 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