{
    "type": "genome",
    "identifier": "GCA_905205455.1",
    "organism": "uncultured Atopobium sp.",
    "title": "uncultured Atopobium sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "EMG",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_905205455.1",
        "bioproject": "PRJEB37358",
        "biosample": "SAMEA7846606",
        "wgs_master": "CAJLDP000000000.1",
        "refseq_category": "na",
        "taxid": "274587",
        "species_taxid": "274587",
        "organism_name": "uncultured Atopobium sp.",
        "infraspecific_name": "",
        "isolate": "ERR1430407-bin.31",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/02/04",
        "asm_name": "ERR1430407-mag-bin.31",
        "submitter": "EMG",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/205/455/GCA_905205455.1_ERR1430407-mag-bin.31",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-02-04",
    "dateModified": "2021-02-04",
    "datePublished": "2021-02-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Atopobium sp."
        ],
        "sample_taxid": [
            "274587"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "0.765 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2710958",
        "Number of Sequences": "128",
        "Longest Sequences (bp)": "101343",
        "N50 (bp)": "39589",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "59.7",
        "Number of CDSs": "2535",
        "Average Protein Length": "309.1",
        "Coding Ratio (%)": "86.7",
        "Number of rRNAs": "0",
        "Number of tRNAs": "46",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Olsenella intestinalis",
                "strain": "strain=KCTC 25379",
                "accession": "GCA_023276655.1",
                "taxid": 2930083,
                "species_taxid": 2930083,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6204,
                "matched_fragments": 192,
                "total_fragments": 841,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermophilibacter provencensis",
                "strain": "strain=Marseille-P2912",
                "accession": "GCA_900128445.1",
                "taxid": 1852386,
                "species_taxid": 1852386,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3501,
                "matched_fragments": 199,
                "total_fragments": 841,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Olsenella uli",
                "strain": "strain=DSM 7084",
                "accession": "GCA_001437585.1",
                "taxid": 133926,
                "species_taxid": 133926,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.3324,
                "matched_fragments": 157,
                "total_fragments": 841,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Olsenella uli",
                "strain": "strain=DSM 7084",
                "accession": "GCA_000143845.1",
                "taxid": 133926,
                "species_taxid": 133926,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.3029,
                "matched_fragments": 157,
                "total_fragments": 841,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parolsenella catena",
                "strain": "strain=JCM 31932",
                "accession": "GCA_003966955.1",
                "taxid": 2003188,
                "species_taxid": 2003188,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1449,
                "matched_fragments": 141,
                "total_fragments": 841,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermophilibacter mediterraneus",
                "strain": "strain=Marseille-P3256",
                "accession": "GCA_900119385.1",
                "taxid": 1871031,
                "species_taxid": 1871031,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0962,
                "matched_fragments": 187,
                "total_fragments": 841,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Olsenella massiliensis",
                "strain": "strain=SIT9",
                "accession": "GCA_001457795.1",
                "taxid": 1622075,
                "species_taxid": 1622075,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0013,
                "matched_fragments": 132,
                "total_fragments": 841,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parolsenella massiliensis",
                "strain": "strain=Marseille-P3237",
                "accession": "GCA_900143685.1",
                "taxid": 1871022,
                "species_taxid": 1871022,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9583,
                "matched_fragments": 147,
                "total_fragments": 841,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermophilibacter immobilis",
                "strain": "strain=LZLJ-2",
                "accession": "GCA_015277515.1",
                "taxid": 2779519,
                "species_taxid": 2779519,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9249,
                "matched_fragments": 171,
                "total_fragments": 841,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Olsenella phocaeensis",
                "strain": "strain=Marseille-P2936",
                "accession": "GCA_900120385.1",
                "taxid": 1852385,
                "species_taxid": 1852385,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7799,
                "matched_fragments": 171,
                "total_fragments": 841,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enorma timonensis",
                "strain": "strain=GD5",
                "accession": "GCA_000321165.1",
                "taxid": 1232436,
                "species_taxid": 1232436,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0845,
                "matched_fragments": 127,
                "total_fragments": 841,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Slackia exigua",
                "strain": "strain=NCTC12994",
                "accession": "GCA_900450505.1",
                "taxid": 84109,
                "species_taxid": 84109,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3719,
                "matched_fragments": 55,
                "total_fragments": 841,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Slackia exigua",
                "strain": "strain=ATCC 700122",
                "accession": "GCA_000162875.1",
                "taxid": 84109,
                "species_taxid": 84109,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2913,
                "matched_fragments": 54,
                "total_fragments": 841,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eggerthella guodeyinii",
                "strain": "strain=HF-1101",
                "accession": "GCA_009834925.2",
                "taxid": 2690837,
                "species_taxid": 2690837,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1454,
                "matched_fragments": 73,
                "total_fragments": 841,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_900314535.1",
                "gtdb_species": "s__UBA7748 sp900314535",
                "ani": 96.0563,
                "matched_fragments": 627,
                "total_fragments": 841,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__UBA7748",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.59",
                "min_intra_species_ani": "96.11",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 25,
                "status": "conclusive"
            },
            {
                "accession": "GCA_900313905.1",
                "gtdb_species": "s__UBA7748 sp900313905",
                "ani": 82.9887,
                "matched_fragments": 472,
                "total_fragments": 841,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__UBA7748",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.35",
                "min_intra_species_ani": "97.65",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_018128285.1",
                "gtdb_species": "s__UBA7748 sp003862175",
                "ani": 79.3537,
                "matched_fragments": 219,
                "total_fragments": 841,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__UBA7748",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.46",
                "min_intra_species_ani": "97.46",
                "mean_intra_species_af": "0.77",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900314575.1",
                "gtdb_species": "s__UBA7741 sp900314575",
                "ani": 79.1394,
                "matched_fragments": 197,
                "total_fragments": 841,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__UBA7741",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.08",
                "min_intra_species_ani": "98.17",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_003862195.1",
                "gtdb_species": "s__Parafannyhessea sp003862195",
                "ani": 78.9234,
                "matched_fragments": 225,
                "total_fragments": 841,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Parafannyhessea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.29",
                "min_intra_species_ani": "97.22",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_902780325.1",
                "gtdb_species": "s__Parafannyhessea sp902787335",
                "ani": 78.7208,
                "matched_fragments": 168,
                "total_fragments": 841,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Parafannyhessea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.70",
                "min_intra_species_ani": "97.32",
                "mean_intra_species_af": "0.78",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCA_905214865.1",
                "gtdb_species": "s__Olsenella_H sp905214865",
                "ani": 78.481,
                "matched_fragments": 173,
                "total_fragments": 841,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Olsenella_H",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.90",
                "min_intra_species_ani": "99.90",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_016899935.1",
                "gtdb_species": "s__Thermophilibacter uli_B",
                "ani": 78.357,
                "matched_fragments": 187,
                "total_fragments": 841,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Thermophilibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000143845.1",
                "gtdb_species": "s__Olsenella uli",
                "ani": 78.3278,
                "matched_fragments": 156,
                "total_fragments": 841,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Olsenella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.32",
                "min_intra_species_ani": "99.02",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_002331575.1",
                "gtdb_species": "s__Olsenella_D sp002331575",
                "ani": 78.301,
                "matched_fragments": 194,
                "total_fragments": 841,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Olsenella_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900314495.1",
                "gtdb_species": "s__UBA7741 sp900314495",
                "ani": 78.293,
                "matched_fragments": 162,
                "total_fragments": 841,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__UBA7741",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.85",
                "min_intra_species_ani": "98.57",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_900119385.1",
                "gtdb_species": "s__Thermophilibacter mediterraneus",
                "ani": 78.0976,
                "matched_fragments": 187,
                "total_fragments": 841,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Thermophilibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902795065.1",
                "gtdb_species": "s__RUG721 sp900321745",
                "ani": 78.0905,
                "matched_fragments": 158,
                "total_fragments": 841,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__RUG721",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.01",
                "min_intra_species_ani": "98.55",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCF_000468755.1",
                "gtdb_species": "s__Olsenella_F profusa_A",
                "ani": 78.0324,
                "matched_fragments": 164,
                "total_fragments": 841,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Olsenella_F",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900549525.1",
                "gtdb_species": "s__Parolsenella sp900549525",
                "ani": 77.5228,
                "matched_fragments": 105,
                "total_fragments": 841,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Parolsenella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.58",
                "min_intra_species_ani": "99.58",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_019116525.1",
                "gtdb_species": "s__Thermophilibacter pullistercoris",
                "ani": 77.474,
                "matched_fragments": 148,
                "total_fragments": 841,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Thermophilibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900314645.1",
                "gtdb_species": "s__UBA1367 sp900314645",
                "ani": 77.4212,
                "matched_fragments": 129,
                "total_fragments": 841,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__UBA1367",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.42",
                "min_intra_species_ani": "97.54",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_017513965.1",
                "gtdb_species": "s__RUG440 sp017513965",
                "ani": 76.8198,
                "matched_fragments": 72,
                "total_fragments": 841,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__RUG440",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.423,
        "cell_length": -0.307,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.666,
        "optimum_ph": null,
        "genome_size": 1575960.388,
        "gc_content": 46.4,
        "coding_genes": 1348.667,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 45.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.8,
        "coccus_cell_shape": 0.2,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Coriobacteriia",
        "o__Coriobacteriales",
        "f__Atopobiaceae",
        "g__UBA7748",
        "s__UBA7748 sp900314535"
    ],
    "_genome_taxon": [
        "uncultured",
        "Atopobium",
        "sp.",
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Coriobacteriia",
        "o__Coriobacteriales",
        "f__Atopobiaceae",
        "g__UBA7748",
        "s__UBA7748 sp900314535",
        "Bacteria",
        "Actinomycetota",
        "Coriobacteriia",
        "Coriobacteriales",
        "Atopobiaceae",
        "UBA7748",
        "UBA7748",
        "sp900314535"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}