{
    "type": "genome",
    "identifier": "GCA_905206115.1",
    "organism": "uncultured Clostridium sp.",
    "title": "uncultured Clostridium sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "EMG",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_905206115.1",
        "bioproject": "PRJEB37358",
        "biosample": "SAMEA7846851",
        "wgs_master": "CAJLGF000000000.1",
        "refseq_category": "na",
        "taxid": "59620",
        "species_taxid": "59620",
        "organism_name": "uncultured Clostridium sp.",
        "infraspecific_name": "",
        "isolate": "ERR1600581-bin.28",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/02/04",
        "asm_name": "ERR1600581-mag-bin.28",
        "submitter": "EMG",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/206/115/GCA_905206115.1_ERR1600581-mag-bin.28",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-02-04",
    "dateModified": "2021-02-04",
    "datePublished": "2021-02-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Clostridium sp."
        ],
        "sample_taxid": [
            "59620"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "0.873 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 65.62,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3048175",
        "Number of Sequences": "400",
        "Longest Sequences (bp)": "41166",
        "N50 (bp)": "9749",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "43.2",
        "Number of CDSs": "2493",
        "Average Protein Length": "325.1",
        "Coding Ratio (%)": "79.8",
        "Number of rRNAs": "0",
        "Number of tRNAs": "12",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Enterocloster clostridioformis",
                "strain": "strain=ATCC 25537",
                "accession": "GCA_900113155.1",
                "taxid": 1531,
                "species_taxid": 1531,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9609,
                "matched_fragments": 115,
                "total_fragments": 816,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium fessum",
                "strain": "strain=SNUG30386",
                "accession": "GCA_003024715.1",
                "taxid": 2126740,
                "species_taxid": 2126740,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9558,
                "matched_fragments": 78,
                "total_fragments": 816,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterocloster clostridioformis",
                "strain": "strain=NCTC11224",
                "accession": "GCA_900447015.1",
                "taxid": 1531,
                "species_taxid": 1531,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.8416,
                "matched_fragments": 115,
                "total_fragments": 816,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterocloster bolteae",
                "strain": "strain=ATCC BAA-613",
                "accession": "GCA_002959675.1",
                "taxid": 208479,
                "species_taxid": 208479,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7225,
                "matched_fragments": 126,
                "total_fragments": 816,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterocloster bolteae",
                "strain": "strain=ATCC BAA-613",
                "accession": "GCA_000154365.1",
                "taxid": 208479,
                "species_taxid": 208479,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6906,
                "matched_fragments": 126,
                "total_fragments": 816,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterocloster bolteae",
                "strain": "strain=ATCC BAA-613",
                "accession": "GCA_002234575.2",
                "taxid": 208479,
                "species_taxid": 208479,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6787,
                "matched_fragments": 126,
                "total_fragments": 816,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium porci",
                "strain": "strain=WCA-389-WT-23D1",
                "accession": "GCA_009696375.1",
                "taxid": 2605778,
                "species_taxid": 2605778,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2595,
                "matched_fragments": 86,
                "total_fragments": 816,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 65.62,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_900543885.1",
                "gtdb_species": "s__Enterocloster sp900543885",
                "ani": 98.5884,
                "matched_fragments": 691,
                "total_fragments": 816,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Enterocloster",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.55",
                "min_intra_species_ani": "98.55",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_900541315.1",
                "gtdb_species": "s__Enterocloster sp900541315",
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                "matched_fragments": 577,
                "total_fragments": 816,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Enterocloster",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.39",
                "min_intra_species_ani": "98.10",
                "mean_intra_species_af": "0.78",
                "min_intra_species_af": "0.68",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_003473545.1",
                "gtdb_species": "s__Enterocloster sp000431375",
                "ani": 86.7867,
                "matched_fragments": 633,
                "total_fragments": 816,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Enterocloster",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.19",
                "min_intra_species_ani": "98.66",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 15,
                "status": "-"
            },
            {
                "accession": "GCF_001517625.2",
                "gtdb_species": "s__Enterocloster sp001517625",
                "ani": 78.68,
                "matched_fragments": 237,
                "total_fragments": 816,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Enterocloster",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.90",
                "min_intra_species_ani": "98.46",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
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                "gtdb_species": "s__Enterocloster sp900538485",
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                "matched_fragments": 217,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Enterocloster",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.11",
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            },
            {
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                "gtdb_species": "s__Enterocloster sp900770345",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Enterocloster",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003478355.1",
                "gtdb_species": "s__UBA3402 sp003478355",
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                "total_fragments": 816,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__UBA3402",
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                "min_intra_species_ani": "96.21",
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                "num_clustered_genomes": 6,
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            },
            {
                "accession": "GCA_900549235.1",
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                "total_fragments": 816,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Enterocloster",
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                "num_clustered_genomes": 3,
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            },
            {
                "accession": "GCF_003481825.1",
                "gtdb_species": "s__Ventrimonas sp003481825",
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                "matched_fragments": 111,
                "total_fragments": 816,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Ventrimonas",
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            },
            {
                "accession": "GCA_900759225.1",
                "gtdb_species": "s__Enterocloster sp900759225",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Enterocloster",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Enterocloster",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
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            },
            {
                "accession": "GCA_900770535.1",
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            {
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                "total_fragments": 816,
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            },
            {
                "accession": "GCA_001312405.1",
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                "matched_fragments": 53,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lacrimispora",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.16,
        "cell_length": 0.434,
        "doubling_h": 0.353,
        "growth_tmp": 33.457,
        "optimum_tmp": 35.173,
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        "genome_size": 4165901.003,
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        "coding_genes": 3796.985,
        "rRNA16S_genes": 9.374,
        "tRNA_genes": 78.312,
        "gram_stain": 0.945,
        "sporulation": 0.967,
        "motility": 0.92,
        "range_salinity": 0.0,
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        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
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        "spiral_cell_shape": 0.0
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    "_gtdb_taxon": [
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        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Enterocloster",
        "s__Enterocloster sp900543885"
    ],
    "_genome_taxon": [
        "uncultured",
        "Clostridium",
        "sp.",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Enterocloster",
        "s__Enterocloster sp900543885",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Lachnospirales",
        "Lachnospiraceae",
        "Enterocloster",
        "Enterocloster",
        "sp900543885"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}