{ "type": "genome", "identifier": "GCA_905207115.1", "organism": "Bifidobacterium angulatum", "title": "Bifidobacterium angulatum", "description": "derived from metagenome; genome length too small", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_905207115.1", "bioproject": "PRJEB37358", "biosample": "SAMEA7847197", "wgs_master": "CAJLKD000000000.1", "refseq_category": "na", "taxid": "1683", "species_taxid": "1683", "organism_name": "Bifidobacterium angulatum", "infraspecific_name": "", "isolate": "ERR260192-bin.2", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/03", "asm_name": "ERR260192-mag-bin.2", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/207/115/GCA_905207115.1_ERR260192-mag-bin.2", "excluded_from_refseq": "derived from metagenome; genome length too small", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-03", "dateModified": "2021-02-03", "datePublished": "2021-02-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Bifidobacterium angulatum" ], "sample_taxid": [ "1683" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden" ], "sample_host_location_id": [], "data_size": "0.418 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 79.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1463293", "Number of Sequences": "56", "Longest Sequences (bp)": "115767", "N50 (bp)": "44802", "Gap 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"validated": true, "ani": 88.7461, "matched_fragments": 291, "total_fragments": 458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium merycicum", "strain": "strain=DSM 6492", "accession": "GCA_900129045.1", "taxid": 78345, "species_taxid": 78345, "relation_to_type": "type", "validated": true, "ani": 86.448, "matched_fragments": 321, "total_fragments": 458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium pongonis", "strain": "strain=64T4", "accession": "GCA_019331805.1", "taxid": 2834432, "species_taxid": 2834432, "relation_to_type": "type", "validated": true, "ani": 84.8475, "matched_fragments": 304, "total_fragments": 458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium catenulatum subsp. kashiwanohense", "strain": "strain=DSM 21854", "accession": "GCA_000771545.1", "taxid": 630129, "species_taxid": 1686, "relation_to_type": "type", "validated": true, "ani": 82.3197, 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"matched_fragments": 210, "total_fragments": 458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium pseudolongum subsp. pseudolongum", "strain": "strain=ATCC 25526", "accession": "GCA_022691205.1", "taxid": 31954, "species_taxid": 1694, "relation_to_type": "type", "validated": true, "ani": 78.1212, "matched_fragments": 154, "total_fragments": 458, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 79.67, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001025155.1", "gtdb_species": "s__Bifidobacterium angulatum", "ani": 95.2212, "matched_fragments": 338, "total_fragments": 458, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.71", "min_intra_species_ani": "95.22", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.74", 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