{ "type": "genome", "identifier": "GCA_905207345.1", "organism": "uncultured Bacillales bacterium", "title": "uncultured Bacillales bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_905207345.1", "bioproject": "PRJEB37358", "biosample": "SAMEA7847297", "wgs_master": "CAJLKV000000000.1", "refseq_category": "na", "taxid": "157472", "species_taxid": "157472", "organism_name": "uncultured Bacillales bacterium", "infraspecific_name": "", "isolate": "ERR321203-bin.13", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/03", "asm_name": "ERR321203-mag-bin.13", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/207/345/GCA_905207345.1_ERR321203-mag-bin.13", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-03", "dateModified": "2021-02-03", "datePublished": "2021-02-03", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Bacillales bacterium" ], "sample_taxid": [ "157472" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Denmark" ], "sample_host_location_id": [], "data_size": "0.436 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.96, "contamination": 2.43, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1581018", "Number of Sequences": "170", "Longest Sequences (bp)": "47897", "N50 (bp)": "11934", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "27.4", "Number of CDSs": "1430", "Average Protein Length": "298.2", "Coding Ratio (%)": "80.9", "Number of rRNAs": "0", "Number of tRNAs": "28", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 98.96, "contamination": 2.43, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_900552975.1", "gtdb_species": "s__Coprovivens sp900552975", "ani": 100.0, "matched_fragments": 360, "total_fragments": 441, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__Coprovivens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.99", "min_intra_species_ani": "97.98", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.82", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCA_018711445.1", "gtdb_species": "s__Coprovivens excrementavium", "ani": 78.4944, 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"d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__Coprovivens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016296185.1", "gtdb_species": "s__Coprovivens sp016296185", "ani": 78.2117, "matched_fragments": 104, "total_fragments": 441, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__Coprovivens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017525015.1", "gtdb_species": "s__Coprovivens sp017525015", "ani": 77.6283, "matched_fragments": 63, "total_fragments": 441, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__Coprovivens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002362595.1", "gtdb_species": "s__Coprovivens sp002362595", "ani": 77.1613, "matched_fragments": 95, "total_fragments": 441, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__Coprovivens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.46", "min_intra_species_ani": "99.46", "mean_intra_species_af": "0.78", "min_intra_species_af": "0.78", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.2, "cell_length": 0.374, "doubling_h": -0.049, "growth_tmp": 33.597, "optimum_tmp": 35.73, "optimum_ph": 7.419, "genome_size": 4176053.049, "gc_content": 43.446, "coding_genes": 3725.899, "rRNA16S_genes": 8.592, "tRNA_genes": 79.569, "gram_stain": 0.991, "sporulation": 0.824, "motility": 0.753, "range_salinity": 0.675, "facultative_respiration": 0.19, "anaerobic_respiration": 0.031, "aerobic_respiration": 0.778, "mesophilic_range_tmp": 0.762, "thermophilic_range_tmp": 0.189, "psychrophilic_range_tmp": 0.048, "bacillus_cell_shape": 0.871, "coccus_cell_shape": 0.123, "filament_cell_shape": 0.001, "coccobacillus_cell_shape": 0.003, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_I", "c__Bacilli_A", "o__RF39", "f__UBA660", "g__Coprovivens", "s__Coprovivens sp900552975" ], "_genome_taxon": [ "uncultured", "Bacillales", "bacterium", "d__Bacteria", "p__Bacillota_I", "c__Bacilli_A", "o__RF39", "f__UBA660", "g__Coprovivens", "s__Coprovivens sp900552975", "Bacteria", "Bacillota", "I", "Bacilli", "A", "RF39", "UBA660", "Coprovivens", "Coprovivens", "sp900552975" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }