{ "type": "genome", "identifier": "GCA_905207405.1", "organism": "Veillonella dispar", "title": "Veillonella dispar", "description": "derived from metagenome; fragmented assembly; genome length too small", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_905207405.1", "bioproject": "PRJEB37358", "biosample": "SAMEA7847425", "wgs_master": "CAJLLI000000000.1", "refseq_category": "na", "taxid": "39778", "species_taxid": "39778", "organism_name": "Veillonella dispar", "infraspecific_name": "", "isolate": "ERR321589-bin.15", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/03", "asm_name": "ERR321589-mag-bin.15", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/207/405/GCA_905207405.1_ERR321589-mag-bin.15", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genome length too small", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-03", "dateModified": "2021-02-03", "datePublished": "2021-02-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Veillonella dispar" ], "sample_taxid": [ "39778" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Denmark" ], "sample_host_location_id": [], "data_size": "0.329 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 51.85, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1117498", "Number of Sequences": "373", "Longest Sequences (bp)": "12820", "N50 (bp)": "3162", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.7", "Number of CDSs": "768", "Average Protein Length": "291.5", "Coding Ratio (%)": "60.1", "Number of rRNAs": "0", "Number of tRNAs": "9", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Veillonella nakazawae", "strain": "strain=T1-7", "accession": "GCA_013393365.1", "taxid": 2682456, "species_taxid": 2682456, "relation_to_type": "type", "validated": true, "ani": 96.5984, "matched_fragments": 149, "total_fragments": 152, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Veillonella infantium", "strain": "strain=T11011-4", "accession": "GCA_002959895.1", "taxid": 1911679, "species_taxid": 1911679, "relation_to_type": "type", "validated": true, "ani": 94.8178, "matched_fragments": 147, "total_fragments": 152, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Veillonella dispar", "strain": "strain=NCTC11831", "accession": "GCA_900637515.1", "taxid": 39778, "species_taxid": 39778, "relation_to_type": "suspected-type", "validated": true, "ani": 93.8412, "matched_fragments": 148, "total_fragments": 152, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Veillonella dispar", "strain": "strain=ATCC 17748", "accession": "GCA_000160015.1", "taxid": 39778, "species_taxid": 39778, "relation_to_type": "suspected-type", "validated": true, "ani": 93.8273, "matched_fragments": 149, "total_fragments": 152, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Veillonella rogosae", "strain": "strain=JCM 15642", "accession": "GCA_002959775.1", "taxid": 423477, "species_taxid": 423477, "relation_to_type": "type", "validated": true, "ani": 91.0927, "matched_fragments": 145, "total_fragments": 152, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Veillonella rogosae", "strain": "strain=JCM 15642", "accession": "GCA_001312485.1", "taxid": 423477, 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