{
    "type": "genome",
    "identifier": "GCA_905208005.1",
    "organism": "uncultured Brachyspira sp.",
    "title": "uncultured Brachyspira sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "EMG",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_905208005.1",
        "bioproject": "PRJEB37358",
        "biosample": "SAMEA7847547",
        "wgs_master": "CAJLNN000000000.1",
        "refseq_category": "na",
        "taxid": "221953",
        "species_taxid": "221953",
        "organism_name": "uncultured Brachyspira sp.",
        "infraspecific_name": "",
        "isolate": "ERR321649-bin.14",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/02/03",
        "asm_name": "ERR321649-mag-bin.14",
        "submitter": "EMG",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/208/005/GCA_905208005.1_ERR321649-mag-bin.14",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-02-03",
    "dateModified": "2021-02-03",
    "datePublished": "2021-02-03",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Brachyspira sp."
        ],
        "sample_taxid": [
            "221953"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Denmark"
        ],
        "sample_host_location_id": [],
        "data_size": "0.565 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1991771",
        "Number of Sequences": "63",
        "Longest Sequences (bp)": "111550",
        "N50 (bp)": "52962",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "35.8",
        "Number of CDSs": "2010",
        "Average Protein Length": "295.4",
        "Coding Ratio (%)": "89.4",
        "Number of rRNAs": "1",
        "Number of tRNAs": "40",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_018711035.1",
                "gtdb_species": "s__Scatousia excrementigallinarum",
                "ani": 99.1419,
                "matched_fragments": 496,
                "total_fragments": 633,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Vampirovibrionia;o__Gastranaerophilales;f__Gastranaerophilaceae;g__Scatousia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.20",
                "min_intra_species_ani": "99.20",
                "mean_intra_species_af": "0.79",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_900554385.1",
                "gtdb_species": "s__Scatousia sp900554385",
                "ani": 82.219,
                "matched_fragments": 353,
                "total_fragments": 633,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Vampirovibrionia;o__Gastranaerophilales;f__Gastranaerophilaceae;g__Scatousia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.41",
                "min_intra_species_ani": "98.83",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_000431315.1",
                "gtdb_species": "s__Scatousia sp000431315",
                "ani": 79.5963,
                "matched_fragments": 333,
                "total_fragments": 633,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Vampirovibrionia;o__Gastranaerophilales;f__Gastranaerophilaceae;g__Scatousia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.32",
                "min_intra_species_ani": "95.18",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_017694215.1",
                "gtdb_species": "s__Scatousia excrementipullorum",
                "ani": 78.7477,
                "matched_fragments": 234,
                "total_fragments": 633,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Vampirovibrionia;o__Gastranaerophilales;f__Gastranaerophilaceae;g__Scatousia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003150395.1",
                "gtdb_species": "s__Scatenecus sp003150395",
                "ani": 78.3881,
                "matched_fragments": 157,
                "total_fragments": 633,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Vampirovibrionia;o__Gastranaerophilales;f__Gastranaerophilaceae;g__Scatenecus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_000438175.1",
                "gtdb_species": "s__Stercorousia faecigallinarum",
                "ani": 78.3483,
                "matched_fragments": 208,
                "total_fragments": 633,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Vampirovibrionia;o__Gastranaerophilales;f__Gastranaerophilaceae;g__Stercorousia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.53",
                "min_intra_species_ani": "97.95",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_905212085.1",
                "gtdb_species": "s__Stercorousia sp905212085",
                "ani": 78.1695,
                "matched_fragments": 175,
                "total_fragments": 633,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Vampirovibrionia;o__Gastranaerophilales;f__Gastranaerophilaceae;g__Stercorousia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900321895.1",
                "gtdb_species": "s__Scatousia sp900321895",
                "ani": 78.1074,
                "matched_fragments": 158,
                "total_fragments": 633,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Vampirovibrionia;o__Gastranaerophilales;f__Gastranaerophilaceae;g__Scatousia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.96",
                "min_intra_species_ani": "98.54",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_900551915.1",
                "gtdb_species": "s__Scatenecus faecavium",
                "ani": 77.9936,
                "matched_fragments": 172,
                "total_fragments": 633,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Vampirovibrionia;o__Gastranaerophilales;f__Gastranaerophilaceae;g__Scatenecus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.79",
                "min_intra_species_ani": "98.66",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_000433095.1",
                "gtdb_species": "s__Stercorousia sp000433095",
                "ani": 77.9665,
                "matched_fragments": 211,
                "total_fragments": 633,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Vampirovibrionia;o__Gastranaerophilales;f__Gastranaerophilaceae;g__Stercorousia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.53",
                "min_intra_species_ani": "99.13",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900548405.1",
                "gtdb_species": "s__Stercorousia sp001917115",
                "ani": 77.9372,
                "matched_fragments": 205,
                "total_fragments": 633,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Vampirovibrionia;o__Gastranaerophilales;f__Gastranaerophilaceae;g__Stercorousia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.35",
                "min_intra_species_ani": "95.50",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_900761225.1",
                "gtdb_species": "s__Stercorousia sp900761225",
                "ani": 77.8557,
                "matched_fragments": 185,
                "total_fragments": 633,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Vampirovibrionia;o__Gastranaerophilales;f__Gastranaerophilaceae;g__Stercorousia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_910588555.1",
                "gtdb_species": "s__Stercorousia sp910588555",
                "ani": 77.6657,
                "matched_fragments": 168,
                "total_fragments": 633,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Vampirovibrionia;o__Gastranaerophilales;f__Gastranaerophilaceae;g__Stercorousia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902760645.1",
                "gtdb_species": "s__UBA1221 sp902760645",
                "ani": 77.6254,
                "matched_fragments": 131,
                "total_fragments": 633,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Vampirovibrionia;o__Gastranaerophilales;f__Gastranaerophilaceae;g__UBA1221",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.01",
                "min_intra_species_ani": "99.01",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_902777385.1",
                "gtdb_species": "s__UBA1221 sp902777385",
                "ani": 77.5001,
                "matched_fragments": 133,
                "total_fragments": 633,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Vampirovibrionia;o__Gastranaerophilales;f__Gastranaerophilaceae;g__UBA1221",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.456,
        "cell_length": 0.738,
        "doubling_h": 0.477,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.4,
        "optimum_ph": 7.1,
        "genome_size": 3148275.979,
        "gc_content": 27.312,
        "coding_genes": 2613.666,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 33.25,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.25,
        "anaerobic_respiration": 0.75,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 1.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Cyanobacteriota",
        "c__Vampirovibrionia",
        "o__Gastranaerophilales",
        "f__Gastranaerophilaceae",
        "g__Scatousia",
        "s__Scatousia excrementigallinarum"
    ],
    "_genome_taxon": [
        "uncultured",
        "Brachyspira",
        "sp.",
        "d__Bacteria",
        "p__Cyanobacteriota",
        "c__Vampirovibrionia",
        "o__Gastranaerophilales",
        "f__Gastranaerophilaceae",
        "g__Scatousia",
        "s__Scatousia excrementigallinarum",
        "Bacteria",
        "Cyanobacteriota",
        "Vampirovibrionia",
        "Gastranaerophilales",
        "Gastranaerophilaceae",
        "Scatousia",
        "Scatousia",
        "excrementigallinarum"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}