{
    "type": "genome",
    "identifier": "GCA_905208085.1",
    "organism": "Clostridiaceae bacterium",
    "title": "Clostridiaceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "EMG",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_905208085.1",
        "bioproject": "PRJEB37358",
        "biosample": "SAMEA7847997",
        "wgs_master": "CAJLNS000000000.1",
        "refseq_category": "na",
        "taxid": "1898204",
        "species_taxid": "1898204",
        "organism_name": "Clostridiaceae bacterium",
        "infraspecific_name": "",
        "isolate": "SRR413633-bin.5",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/02/03",
        "asm_name": "SRR413633-mag-bin.5",
        "submitter": "EMG",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/208/085/GCA_905208085.1_SRR413633-mag-bin.5",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-02-03",
    "dateModified": "2021-02-03",
    "datePublished": "2021-02-03",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Clostridiaceae bacterium"
        ],
        "sample_taxid": [
            "1898204"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "0.610 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 94.91,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2154619",
        "Number of Sequences": "140",
        "Longest Sequences (bp)": "112153",
        "N50 (bp)": "28337",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "58.4",
        "Number of CDSs": "1990",
        "Average Protein Length": "303.9",
        "Coding Ratio (%)": "84.2",
        "Number of rRNAs": "0",
        "Number of tRNAs": "35",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Butyricicoccus faecihominis",
                "strain": "strain=JCM 31056",
                "accession": "GCA_014648015.1",
                "taxid": 1712515,
                "species_taxid": 1712515,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.4744,
                "matched_fragments": 424,
                "total_fragments": 639,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Butyricicoccus faecihominis",
                "strain": "strain=JCM 31056",
                "accession": "GCA_016586375.1",
                "taxid": 1712515,
                "species_taxid": 1712515,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.434,
                "matched_fragments": 415,
                "total_fragments": 639,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agathobaculum desmolans",
                "strain": "strain=ATCC 43058",
                "accession": "GCA_000701665.1",
                "taxid": 39484,
                "species_taxid": 39484,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.5136,
                "matched_fragments": 246,
                "total_fragments": 639,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Butyricicoccus pullicaecorum",
                "strain": "strain=DSM 23266",
                "accession": "GCA_900167005.1",
                "taxid": 501571,
                "species_taxid": 501571,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8182,
                "matched_fragments": 166,
                "total_fragments": 639,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Intestinibacillus massiliensis",
                "strain": "strain=type strain: Marseille-P3216",
                "accession": "GCA_900155735.1",
                "taxid": 1871029,
                "species_taxid": 1871029,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.798,
                "matched_fragments": 189,
                "total_fragments": 639,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Butyricicoccus intestinisimiae",
                "strain": "strain=MSJd-7",
                "accession": "GCA_018918345.1",
                "taxid": 2841509,
                "species_taxid": 2841509,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7339,
                "matched_fragments": 83,
                "total_fragments": 639,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 94.91,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003481705.1",
                "gtdb_species": "s__Agathobaculum sp003481705",
                "ani": 98.5854,
                "matched_fragments": 608,
                "total_fragments": 639,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Agathobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.33",
                "min_intra_species_ani": "96.26",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 8,
                "status": "conclusive"
            },
            {
                "accession": "GCA_900544475.1",
                "gtdb_species": "s__Agathobaculum sp900544475",
                "ani": 89.0154,
                "matched_fragments": 417,
                "total_fragments": 639,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Agathobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.90",
                "min_intra_species_ani": "97.82",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_003096535.1",
                "gtdb_species": "s__Agathobaculum butyriciproducens",
                "ani": 83.4565,
                "matched_fragments": 423,
                "total_fragments": 639,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Agathobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.66",
                "min_intra_species_ani": "95.68",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 34,
                "status": "-"
            },
            {
                "accession": "GCA_900555465.1",
                "gtdb_species": "s__Agathobaculum intestinigallinarum",
                "ani": 81.5437,
                "matched_fragments": 219,
                "total_fragments": 639,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Agathobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.06",
                "min_intra_species_ani": "97.06",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900625105.1",
                "gtdb_species": "s__Agathobaculum sp900625105",
                "ani": 81.0693,
                "matched_fragments": 343,
                "total_fragments": 639,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Agathobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019113065.1",
                "gtdb_species": "s__Agathobaculum stercoravium",
                "ani": 81.0568,
                "matched_fragments": 283,
                "total_fragments": 639,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Agathobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.25",
                "min_intra_species_ani": "98.25",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_019115425.1",
                "gtdb_species": "s__Agathobaculum merdigallinarum",
                "ani": 80.4408,
                "matched_fragments": 250,
                "total_fragments": 639,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Agathobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019115615.1",
                "gtdb_species": "s__Agathobaculum merdavium",
                "ani": 80.3641,
                "matched_fragments": 280,
                "total_fragments": 639,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Agathobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_900557315.1",
                "gtdb_species": "s__Agathobaculum sp900557315",
                "ani": 80.2133,
                "matched_fragments": 200,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Agathobaculum",
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                "mean_intra_species_ani": "100.00",
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                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCA_019114345.1",
                "gtdb_species": "s__Agathobaculum pullistercoris",
                "ani": 80.1669,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Agathobaculum",
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                "mean_intra_species_ani": "98.72",
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                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 4,
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            },
            {
                "accession": "GCF_000701665.1",
                "gtdb_species": "s__Agathobaculum desmolans",
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                "total_fragments": 639,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Agathobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.85",
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                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.185,
        "cell_length": 0.421,
        "doubling_h": 0.266,
        "growth_tmp": 37.264,
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        "gc_content": 30.729,
        "coding_genes": 3847.554,
        "rRNA16S_genes": 9.432,
        "tRNA_genes": 79.922,
        "gram_stain": 0.928,
        "sporulation": 0.868,
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        "mesophilic_range_tmp": 0.75,
        "thermophilic_range_tmp": 0.208,
        "psychrophilic_range_tmp": 0.041,
        "bacillus_cell_shape": 0.988,
        "coccus_cell_shape": 0.011,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
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        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Butyricicoccaceae",
        "g__Agathobaculum",
        "s__Agathobaculum hominis"
    ],
    "_genome_taxon": [
        "Clostridiaceae",
        "bacterium",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Butyricicoccaceae",
        "g__Agathobaculum",
        "s__Agathobaculum hominis",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Oscillospirales",
        "Butyricicoccaceae",
        "Agathobaculum",
        "Agathobaculum",
        "hominis"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}