{ "type": "genome", "identifier": "GCA_905208875.1", "organism": "uncultured Veillonella sp.", "title": "uncultured Veillonella sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_905208875.1", "bioproject": "PRJEB37358", "biosample": "SAMEA7846950", "wgs_master": "CAJLQP000000000.1", "refseq_category": "na", "taxid": "159268", "species_taxid": "159268", "organism_name": "uncultured Veillonella sp.", "infraspecific_name": "", "isolate": "ERR1600666-bin.80", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/03", "asm_name": "ERR1600666-mag-bin.80", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/208/875/GCA_905208875.1_ERR1600666-mag-bin.80", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-03", "dateModified": "2021-02-03", "datePublished": "2021-02-03", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Veillonella sp." ], "sample_taxid": [ "159268" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.526 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 63.89, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1829495", "Number of Sequences": "134", "Longest Sequences (bp)": "87472", "N50 (bp)": "23272", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.5", "Number of CDSs": "1663", "Average Protein Length": "304.7", "Coding Ratio (%)": "83.1", "Number of rRNAs": "1", "Number of tRNAs": "27", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Veillonella tobetsuensis", "strain": "strain=ATCC BAA-2400", "accession": "GCA_001078375.1", "taxid": 1110546, "species_taxid": 1110546, "relation_to_type": "type", "validated": true, "ani": 97.1335, "matched_fragments": 484, "total_fragments": 534, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Veillonella atypica", "strain": "strain=KON", "accession": "GCA_000318355.2", "taxid": 39777, "species_taxid": 39777, "relation_to_type": "type", "validated": true, "ani": 88.249, "matched_fragments": 448, "total_fragments": 534, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Veillonella atypica", "strain": "strain=ATCC 17744", "accession": "GCA_002959915.1", "taxid": 39777, "species_taxid": 39777, "relation_to_type": "type", "validated": true, "ani": 88.2335, "matched_fragments": 449, "total_fragments": 534, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Veillonella atypica", "strain": "strain=NCTC11830", "accession": "GCA_900460235.1", "taxid": 39777, "species_taxid": 39777, "relation_to_type": "type", "validated": true, "ani": 88.1751, "matched_fragments": 456, "total_fragments": 534, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Veillonella nakazawae", "strain": "strain=T1-7", "accession": "GCA_013393365.1", "taxid": 2682456, "species_taxid": 2682456, "relation_to_type": "type", "validated": true, "ani": 83.2592, "matched_fragments": 350, "total_fragments": 534, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Veillonella rogosae", "strain": "strain=JCM 15642", "accession": "GCA_002959775.1", "taxid": 423477, "species_taxid": 423477, "relation_to_type": "type", "validated": true, "ani": 83.1627, "matched_fragments": 332, "total_fragments": 534, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Veillonella infantium", "strain": "strain=T11011-4", "accession": "GCA_002959895.1", "taxid": 1911679, "species_taxid": 1911679, "relation_to_type": "type", "validated": true, "ani": 83.0166, "matched_fragments": 339, "total_fragments": 534, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Veillonella parvula", "strain": "strain=DSM 2008", "accession": "GCA_000024945.1", "taxid": 29466, "species_taxid": 29466, "relation_to_type": "suspected-type", "validated": true, "ani": 81.7586, "matched_fragments": 344, "total_fragments": 534, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Veillonella parvula", "strain": "strain=NCTC11810", "accession": "GCA_900186885.1", "taxid": 29466, "species_taxid": 29466, "relation_to_type": "suspected-type", "validated": true, "ani": 81.7488, "matched_fragments": 340, "total_fragments": 534, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Veillonella caviae", "strain": "strain=DSM 20738", "accession": "GCA_003992125.1", "taxid": 248316, "species_taxid": 248316, "relation_to_type": "type", "validated": true, "ani": 80.3585, "matched_fragments": 265, "total_fragments": 534, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 63.89, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001078375.1", "gtdb_species": "s__Veillonella tobetsuensis", "ani": 97.1167, "matched_fragments": 485, "total_fragments": 534, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.55", "min_intra_species_ani": "97.11", "mean_intra_species_af": "0.92", "min_intra_species_af": 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