{
    "type": "genome",
    "identifier": "GCA_905209205.1",
    "organism": "Lactobacillus helveticus",
    "title": "Lactobacillus helveticus",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "EMG",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_905209205.1",
        "bioproject": "PRJEB37358",
        "biosample": "SAMEA7846971",
        "wgs_master": "CAJLRZ000000000.1",
        "refseq_category": "na",
        "taxid": "1587",
        "species_taxid": "1587",
        "organism_name": "Lactobacillus helveticus",
        "infraspecific_name": "",
        "isolate": "ERR1600678-bin.5",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/02/03",
        "asm_name": "ERR1600678-mag-bin.5",
        "submitter": "EMG",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/209/205/GCA_905209205.1_ERR1600678-mag-bin.5",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-02-03",
    "dateModified": "2021-02-03",
    "datePublished": "2021-02-03",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lactobacillus helveticus"
        ],
        "sample_taxid": [
            "1587"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "0.478 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1657283",
        "Number of Sequences": "323",
        "Longest Sequences (bp)": "42344",
        "N50 (bp)": "6834",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "36.9",
        "Number of CDSs": "1653",
        "Average Protein Length": "255.5",
        "Coding Ratio (%)": "76.5",
        "Number of rRNAs": "0",
        "Number of tRNAs": "33",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Lactobacillus helveticus",
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                "species_taxid": 1587,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactobacillus helveticus",
                "strain": "strain=DSM 20075",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 98.8024,
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                "status": "conclusive"
            },
            {
                "organism_name": "Lactobacillus helveticus",
                "strain": "strain=CGMCC 1.1877",
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                "species_taxid": 1587,
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                "ani": 98.7714,
                "matched_fragments": 317,
                "total_fragments": 377,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactobacillus gallinarum",
                "strain": "strain=DSM 10532",
                "accession": "GCA_001434975.1",
                "taxid": 52242,
                "species_taxid": 52242,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.3351,
                "matched_fragments": 306,
                "total_fragments": 377,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus kefiranofaciens subsp. kefirgranum",
                "strain": "strain=DSM 10550",
                "accession": "GCA_001434195.1",
                "taxid": 190906,
                "species_taxid": 267818,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.1588,
                "matched_fragments": 260,
                "total_fragments": 377,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus kitasatonis",
                "strain": "strain=DSM 16761",
                "accession": "GCA_001434435.1",
                "taxid": 237446,
                "species_taxid": 237446,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.1133,
                "matched_fragments": 252,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus ultunensis",
                "strain": "strain=DSM 16047",
                "accession": "GCA_001436305.1",
                "taxid": 227945,
                "species_taxid": 227945,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.8426,
                "matched_fragments": 250,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus acidophilus",
                "strain": "strain=ATCC 4356",
                "accession": "GCA_000786395.1",
                "taxid": 1579,
                "species_taxid": 1579,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.1089,
                "matched_fragments": 240,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 4.17,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_000160855.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.35",
                "min_intra_species_ani": "96.37",
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            },
            {
                "accession": "GCF_001434975.1",
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                "num_clustered_genomes": 17,
                "status": "-"
            },
            {
                "accession": "GCF_900103655.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus",
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                "mean_intra_species_ani": "99.62",
                "min_intra_species_ani": "99.18",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_002706375.1",
                "gtdb_species": "s__Lactobacillus amylovorus",
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                "matched_fragments": 269,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus",
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            {
                "accession": "GCF_000615285.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
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                "num_clustered_genomes": 31,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.301,
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        "rRNA16S_genes": 4.125,
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        "bacillus_cell_shape": 1.0,
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        "g__Lactobacillus",
        "s__Lactobacillus helveticus"
    ],
    "_genome_taxon": [
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        "d__Bacteria",
        "p__Bacillota",
        "c__Bacilli",
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        "f__Lactobacillaceae",
        "g__Lactobacillus",
        "s__Lactobacillus helveticus",
        "Bacteria",
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        "Bacilli",
        "Lactobacillales",
        "Lactobacillaceae",
        "Lactobacillus",
        "Lactobacillus",
        "helveticus"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}