{ "type": "genome", "identifier": "GCA_905209255.1", "organism": "Raoultibacter timonensis", "title": "Raoultibacter timonensis", "description": "derived from metagenome; incomplete metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_905209255.1", "bioproject": "PRJEB37358", "biosample": "SAMEA7846956", "wgs_master": "CAJLSH000000000.1", "refseq_category": "na", "taxid": "1907662", "species_taxid": "1907662", "organism_name": "Raoultibacter timonensis", "infraspecific_name": "", "isolate": "ERR1600670-bin.17", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/04", "asm_name": "ERR1600670-mag-bin.17", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/209/255/GCA_905209255.1_ERR1600670-mag-bin.17", "excluded_from_refseq": "derived from metagenome; incomplete metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-04", "dateModified": "2021-02-04", "datePublished": "2021-02-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Raoultibacter timonensis" ], "sample_taxid": [ "1907662" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.007 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 84.05, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3534823", "Number of Sequences": "534", "Longest Sequences (bp)": "43551", "N50 (bp)": "8814", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.3", "Number of CDSs": "2546", "Average Protein Length": "330.8", "Coding Ratio (%)": "71.5", "Number of rRNAs": "1", "Number of tRNAs": "27", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Raoultibacter timonensis", "strain": "strain=Marseille-P3277", "accession": "GCA_900240215.1", "taxid": 1907662, "species_taxid": 1907662, "relation_to_type": "type", "validated": true, "ani": 98.8036, "matched_fragments": 834, "total_fragments": 902, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Raoultibacter massiliensis", "strain": "strain=Marseille-P2849", "accession": "GCA_900199545.1", "taxid": 1852371, "species_taxid": 1852371, "relation_to_type": "type", "validated": true, "ani": 82.0269, "matched_fragments": 557, "total_fragments": 902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eggerthella lenta", "strain": "strain=UCSF2243", "accession": "GCA_003339945.1", "taxid": 84112, "species_taxid": 84112, "relation_to_type": "type", "validated": true, "ani": 79.2635, "matched_fragments": 254, "total_fragments": 902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eggerthella lenta", "strain": "strain=DSM 2243", "accession": "GCA_003339975.1", "taxid": 84112, "species_taxid": 84112, "relation_to_type": "type", "validated": true, "ani": 79.222, "matched_fragments": 257, "total_fragments": 902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eggerthella lenta", "strain": "strain=ATCC 25559", "accession": "GCA_003340105.1", "taxid": 84112, "species_taxid": 84112, "relation_to_type": "type", "validated": true, "ani": 79.1827, "matched_fragments": 254, "total_fragments": 902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eggerthella lenta", "strain": "strain=DSM 2243", "accession": "GCA_000024265.1", "taxid": 84112, "species_taxid": 84112, "relation_to_type": "type", "validated": true, "ani": 79.1035, "matched_fragments": 263, "total_fragments": 902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eggerthella sinensis", "strain": "strain=DSM 16107", "accession": "GCA_003725965.1", "taxid": 242230, "species_taxid": 242230, "relation_to_type": "type", "validated": true, "ani": 79.048, "matched_fragments": 291, "total_fragments": 902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eggerthella guodeyinii", "strain": "strain=HF-1101", "accession": "GCA_009834925.2", "taxid": 2690837, "species_taxid": 2690837, "relation_to_type": "type", "validated": true, "ani": 79.0298, "matched_fragments": 307, "total_fragments": 902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eggerthella timonensis", "strain": "strain=Marseille-P3135", "accession": "GCA_900184265.1", "taxid": 1871008, "species_taxid": 1871008, "relation_to_type": "type", "validated": true, "ani": 79.0234, "matched_fragments": 301, "total_fragments": 902, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eggerthella sinensis", "strain": "strain=DSM 16107", "accession": "GCA_003339815.1", "taxid": 242230, "species_taxid": 242230, "relation_to_type": "type", "validated": true, "ani": 78.9611, "matched_fragments": 291, "total_fragments": 902, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 84.05, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900240215.1", "gtdb_species": "s__Raoultibacter timonensis", "ani": 98.8036, "matched_fragments": 834, "total_fragments": 902, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Raoultibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.77", "min_intra_species_ani": "98.77", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_900199545.1", "gtdb_species": "s__Raoultibacter massiliensis", "ani": 82.0343, "matched_fragments": 557, "total_fragments": 902, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Raoultibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_901411515.1", "gtdb_species": "s__Raoultibacter sp901411515", "ani": 81.4934, "matched_fragments": 533, "total_fragments": 902, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Raoultibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000024265.1", "gtdb_species": "s__Eggerthella lenta", "ani": 79.0895, "matched_fragments": 265, "total_fragments": 902, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Eggerthella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.39", "min_intra_species_ani": "97.51", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.82", "num_clustered_genomes": 72, "status": "-" }, { "accession": "GCA_900170005.1", "gtdb_species": "s__Gordonibacter massiliensis", "ani": 79.0592, "matched_fragments": 292, "total_fragments": 902, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Gordonibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.56", "min_intra_species_ani": "97.12", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_009834925.2", "gtdb_species": "s__Eggerthella sp014287365", "ani": 79.0154, "matched_fragments": 308, "total_fragments": 902, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Eggerthella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.74", "min_intra_species_ani": "96.91", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.85", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900184265.1", "gtdb_species": "s__Eggerthella timonensis", "ani": 79.0081, "matched_fragments": 302, "total_fragments": 902, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Eggerthella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003339815.1", "gtdb_species": "s__Eggerthella sinensis", "ani": 78.9611, "matched_fragments": 291, "total_fragments": 902, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Eggerthella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.07", "min_intra_species_ani": "98.15", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.88", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_002899695.1", "gtdb_species": "s__Rubneribacter badeniensis", "ani": 78.7345, "matched_fragments": 227, "total_fragments": 902, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Rubneribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.61", "min_intra_species_ani": "97.86", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.82", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_003340345.1", "gtdb_species": "s__Paraeggerthella hongkongensis_A", "ani": 78.2253, "matched_fragments": 204, "total_fragments": 902, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Paraeggerthella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.75", "min_intra_species_ani": "98.26", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.89", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_900754955.1", "gtdb_species": "s__CAAEEV01 sp900754955", "ani": 77.9072, "matched_fragments": 130, "total_fragments": 902, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__CAAEEV01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.85", "min_intra_species_ani": "99.85", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_905203045.1", "gtdb_species": "s__CAG-1427 sp900555755", "ani": 76.262, "matched_fragments": 55, "total_fragments": 902, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__CAG-1427", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.41", "min_intra_species_ani": "98.83", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.98", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Actinomycetota", "c__Coriobacteriia", "o__Coriobacteriales", "f__Eggerthellaceae", "g__Raoultibacter", "s__Raoultibacter timonensis" ], "_genome_taxon": [ "Raoultibacter", "timonensis", "d__Bacteria", "p__Actinomycetota", "c__Coriobacteriia", "o__Coriobacteriales", "f__Eggerthellaceae", "g__Raoultibacter", "s__Raoultibacter timonensis", "Bacteria", "Actinomycetota", "Coriobacteriia", "Coriobacteriales", "Eggerthellaceae", "Raoultibacter", "Raoultibacter", "timonensis" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }